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Name : clpB (HDN1F_03420) Accession : YP_003809591.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : Heat shock protein F84.1 Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 433588 - 436161 bp Length : 2574 bp Strand : + Note : silverDB:HdN1F452 DNA sequence : ATGCGACTCGACAAACTTACAAGCAAATTACAATCCGCGTTATCCGAAGCCCAATCCATCGCCTTGGGCCGCGACCACAA CTATATTGAATCTGCCCATGTGCTTATGGCGTTAATCGAAGATAACGCCAGTGGAATTCGCCCGTTACTGGCGCAGGCTG GCTGCAACGTCGGGCAACTCAAGGATGAAATTACCGCCATCCTGATCCGTATGCCACATATTAAAAATCCTGACGGAGAT ATTCGACTTTCACCGGAACTCGCGCGCCTTTTTAATTTGGCAGATCGGCACGCGCAAAAACGTGGCGATCAATACATCTC CAGCGAACTGCTCTTGCTTGCCATGCTCGAAGATAAAGGCGATCTCGGTACGGTTTTCAAAAAGCTCGGTATTTCCGCAA AAGACGTTGAAAATGCCATCGAAAAAGTACGTGGAGGCAGCACGGTGGATGATCCTAACGCTGAAGATCAGCGCCAAGCC CTGCAAAAATATACCATCGACCTTACCGAACGCGCCCGCAAAGGCAAACTTGATCCAGTCATCGGCCGTGACGATGAAAT CCGCCGCACCATCCAAGTGCTACAGCGCCGCACCAAAAACAACCCAGTGCTCATCGGTGAACCCGGCGTCGGCAAAACCG CCATCGCTGAAGGCCTAGCACAGCGTATCGTAAACGGCGAAGTTCCAGAAGGCCTCAAAAACAAGCGCGTTCTCTCCCTC GACATGGGTTCGCTGCTCGCGGGAGCAAAATTTCGCGGTGAATTTGAAGAACGCCTCAAATCCGTCCTTACCGAACTCGC CAAAGAAGAGGGTGCAGTCATCCTCTTCATTGACGAGCTCCACACCATGGTCGGTGCAGGGAAAGCCGAAGGCGCCATGG ACGCAGGCAATATGCTGAAACCTGCGCTTGCGCGCGGCGAGTTGCACTGCGTCGGCGCAACCACGTTGGATGAATATCGC CAGTACATCGAAAAGGATGCTGCACTGGAACGCCGCTTCCAAAAAGTCCTCGTAGACCAGCCCAGTGTCGAAGACACCAT CGCCATCCTGCGCGGCCTCAAAGAACGCTACGAAGTCCACCACGGCGTAGACATCACCGACTCCGCAATCGTCGAAGCTG CCAAACTCTCTCAGCGTTATATCACCGATCGCCAGCTCCCCGATAAAGCCATCGACCTGATCGACGAAGCGGCCAGCCGT ATCCGCATGGAAATGGACTCCAAACCCGAAGAACTCGACCGTCTGGATCGCCGCCTCATCCAATTCAAAATGGAACGCGA AGCCCTCAAAAAAGAAGACGACGAAGCCTCACGCAAACGCCTTGAAAAACTCAACGAAGACATCGCAAAGAACGAACGCG AATACGCCGACCTAGAAGAAATCTGGAACGCCGAAAAAGCCGCTCTGCAAGGCAGTCAACAAATCAAAGTAGAACTTGAA CAGGCCCGCATCGACATGGACGGCGCCCGCCGCCGAGGCGATCTGGCGCGCATGTCAGAACTTCAATACGGTCGCATCCC AGAGCTTGAAAAGCGCCTCGACATGGCGACCCAAGCAGAAATGACCGAAATGAAACTACTTCGCAATCGAGTAACGGAAG AAGAAGTCGCGGAAGTCGTTTCCAAATGGACAGGCATCCCCGTTTCCAAAATGCTCGAAGGAGAACGCGAAAAACTCCTG CAAATGGAAGATTCGCTCCACAAACGTGTCGTCGGCCAGCACGAAGCCATTGTTGCCGTAGCAAACGCAGTGCGTCGCTC GCGCGCAGGGCTTTCGGATCCCCATAGGCCCAACGGCTCATTCCTGTTCCTTGGCCCTACCGGTGTCGGTAAAACCGAAC TCTGTAAGGCGCTCGCAGAATTCCTCTTTGACACGCAAGATGCACTAGTGCGGATTGATATGTCAGAGTTTATGGAAAAA CACTCCGTTGCCCGCTTGATCGGCGCCCCCCCAGGCTACGTCGGCTACGAAGAAGGCGGCTACCTCACCGAAACGGTACG CCGCAAACCGTACTCCGTGATCTTGCTGGATGAAGTAGAAAAAGCGCACCCAGATGTATTCAACATTCTCCTGCAAGTAC TGGAAGATGGCCGCTTAACCGATGGCCAAGGCCGTACCGTAGATTTTAAAAACACCGTCGTCGTAATGACCTCTAACCTT GGTTCCGACATGATTCAGACCTTGGCCCGTGAGGCAGATTACAACAGCATGCGCGACGCAGTAATGGATGTGGTCGGCCA GCACTTCCGCCCAGAGTTTATCAACCGTATTGATGAAGTTGTTGTGTTCCATCCCTTGGCAGATAGCCAGATTCGCGGCA TCGCTGAGATCCAGCTCGCGAACTTGCGCAAACGCTTACTCGATCGTGATCTTAAATTGGACTTAGATGCCGAGGTGATG AACCGAATCATCGAAGTTGGCTACGATCCGGTGTTCGGTGCTCGGCCGCTAAAACGCGCCATACAGCGCCTGATTGAAAA CCCGCTAGCGCAGGATATTTTGGCGGGCCGATTCATGCCGGGCGATGTGATTCATTCCCACCTTCAGGATGGCAGCCTCG TGTTCACAAAATAA Protein sequence : MRLDKLTSKLQSALSEAQSIALGRDHNYIESAHVLMALIEDNASGIRPLLAQAGCNVGQLKDEITAILIRMPHIKNPDGD IRLSPELARLFNLADRHAQKRGDQYISSELLLLAMLEDKGDLGTVFKKLGISAKDVENAIEKVRGGSTVDDPNAEDQRQA LQKYTIDLTERARKGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNGEVPEGLKNKRVLSL DMGSLLAGAKFRGEFEERLKSVLTELAKEEGAVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYR QYIEKDAALERRFQKVLVDQPSVEDTIAILRGLKERYEVHHGVDITDSAIVEAAKLSQRYITDRQLPDKAIDLIDEAASR IRMEMDSKPEELDRLDRRLIQFKMEREALKKEDDEASRKRLEKLNEDIAKNEREYADLEEIWNAEKAALQGSQQIKVELE QARIDMDGARRRGDLARMSELQYGRIPELEKRLDMATQAEMTEMKLLRNRVTEEEVAEVVSKWTGIPVSKMLEGEREKLL QMEDSLHKRVVGQHEAIVAVANAVRRSRAGLSDPHRPNGSFLFLGPTGVGKTELCKALAEFLFDTQDALVRIDMSEFMEK HSVARLIGAPPGYVGYEEGGYLTETVRRKPYSVILLDEVEKAHPDVFNILLQVLEDGRLTDGQGRTVDFKNTVVVMTSNL GSDMIQTLAREADYNSMRDAVMDVVGQHFRPEFINRIDEVVVFHPLADSQIRGIAEIQLANLRKRLLDRDLKLDLDAEVM NRIIEVGYDPVFGARPLKRAIQRLIENPLAQDILAGRFMPGDVIHSHLQDGSLVFTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 5e-162 | 44 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 7e-104 | 42 |
