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Name : rpoB (HDN1F_03580) Accession : YP_003809607.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 453651 - 457721 bp Length : 4071 bp Strand : + Note : silverDB:HdN1F469 DNA sequence : ATGGCATATTCTTTTACTGAAAAGAAGCGGATTCGGAAAGCCTTTGGTCAGATCAATGACGCAATGGATGTTCCTTACCT CCTCGCCATTCAACTGGACTCGTACAGGAAGTTCCTGCAGTTGGATAAACTTGCCGCGGGTCGCGGAGACGATGGCCTGC AGGCAGCGTTCAAATCAGTTTTTCCGATCACCAGTTATTCTGGCAGCGCAGCGCTCGAGTTTGTGGAATATGTTTTAGGT GAGCCAGCATTTGATGTAAAGGAGTGCCAACTTCGTGGTGCCACCTATTCCGCGCCTTTGCGGGTTAAGCTCCGTTTGAT TATCTACGATAAGGATTCCCCGAGTAAGGCAATTAAGGATATTAAGGAGCAAGAAGTCTATATGGGGGAGATCCCCTTAA TGACGGATACAGGGACATTCGTGATTAACGGCACGGAGCGAGTGATCGTTTCTCAGTTGCATCGTTCCCCGGGCGTTTTT TTTGATCACGATCGTGGAAAGACGCATTCTTCAGGCAAGTTGCTTTATTCCGCGCGGATAATTCCGTACCGCGGATCTTG GCTAGACTTTGAGTTTGATCCTAAAGATTTGGTTTATGTTCGAATTGACCGGAGGCGCAAGCTTCCCGCGACTGTATTGT TGCGTGCATTGGGCTATGAGTCTGAGCAGATTCTAGAATTGTTCTTTGATACAAATAAGGTTCTTGTTGAAAGCGGCGAG TTTAAACTTGAATTAATCCCAGAGCGCTTAAGGGGCGAGACCGCACTTTTCGACATAAAGGCTGGTGATACTGTTGTTGT CGAATCCGGCAGACGCATAACCGCAAGACATATTCGACAGCTGGAGAAGGCAGAACTGCGGTCCTTGTTGGTTCCGAAGG AATATCTCGTTGGTAAAGTGCTTGCCAAAGGCGTTATAGATCGATCTACAGGAGAAGTCATAGCACCCTGTAATGCCGAG GTCACAGATGAATTGCTTGATAAGCTTGTCGGCCTCAGTGTGACTTCGTTCGAGACACTTTACACGAATGAACTTGACCG AGGGCCGTTTCTTTCTGACACATTGCGCACTGATCAAACCACTAGCGCTCTCGAAGCTCTGGTCGAAATTTATCGAATGA TGCGCCCTGGAGAACCGCCTACGAAGGATGCGGCGGAGGGTCTGTTTAAAAATCTGTTCTTCTCGGCCGAGCGCTATGAT TTGTCTGCAGTGGGCAGGATGAAATTCAATCGCCGCCTAGGTCGAAAGGAGACGACGGGCGAAGGAACCTTAAGTAGAGA AGACATAGTTGCTGTATTAAAGACGCTCGTTGCCATCCGTAATGGTCAGGGTGTTGTTGACGATATCGACCATTTAGGCA ACCGCCGTGTGCGTTCTGTCGGTGAGATGGCCGAAAATCAGTTTCGTGTGGGGCTAGTTCGCGTCGAGCGCGCTGTCAAG GAGCGTTTAAGCCTTGCGGAGAGTGAAGGTTTGATGCCGCAGGATTTGATCAATGCAAAGCCAGTAGCTGCAGCGATTAA GGAGTTTTTCGGGTCTAGTCAGCTGTCGCAGTTTATGGATCAGAACAACCCGCTATCTGAGATTACACATAAGCGCAGGG TTTCTGCGCTTGGGCCTGGCGGGCTCACGCGGGAGAGGGCGGGCTTTGAGGTGCGGGACGTTCATCCCACGCATTATGGC CGTTTGTGCCCCATCGAAACGCCGGAAGGGCCAAACATTGGGTTAATTAACTCACTTGCAGCGTTTGCTAGGGCAAATGA CTACGGATTTTTGGAAAGCCCTTATAGAAAGGTGACGAACGGCAGAGCAACCGATGAGGTTGTTTTCCTCTCGGCTATTG AAGAATCCGAGTATATGGTTGCGCAAGCCAGCGCAGAATTAGATGAGGAAGGGAATCTCGTCGAGGATTTAGTGCCGGTT CGCCACAAGAACGAGTTCACCGTTACGACTACAGAGAATGTAGAGTATATGGACGTATCGCCACGCCAGGTCGTTTCGGT TGCAGCGTCCTTGATCCCGTTCCTTGAGCACGACGACGCGAACCGAGCACTGATGGGCTCGAACATGCAGCGTCAAGCGG TGCCGACTTTACGCTCGGAGAAACCGCTTGTAGGAACAGGCATGGAAGGCACGGTAGCGCGGGATTCAGGCGTTTGTGTC GTGGCAAAACGTGGTGGGTTAATTGACCGCGTAGATGCTTCTCGGATTGTTGTTCGCGTGAATGAGGATGAAATTACCGA TGGCGAGGCCGGCGTAGATATCTACAGCCTTACGAAGTTCACTCGTTCAAACCAGAATACCTGTATAAACCAGAAACCAC TCGTTCATGTCGGAGATAGAGTCGCTCGTAACGATATTCTCGCTGACGGACCTTCGGTGGATATCGGTGAGCTTGCGCTT GGTCAAAACATGCGCGTCGCATTTATGCCGTGGAATGGCTACAACTTCGAAGACTCCATTATGCTTTCGGAGCGGGTCGT TCAAGAGGATCGGTTTACGACGATTCATATCCAAGAGCTCACTTGCGTGGCTCGCGATACGAAGCTTGGGCCTGAAGAAA TAACCGCCGACATTCCTAACGTCAGCGAATCCGCTTTAGCAAAACTTGACGAGGCGGGCGTCGTACACATCGGCGCGGAA GTCGCGGCTGGCGATATTCTCGTTGGCAAAGTTACTCCCAAGGGCGAGACCCAGCTTACGCCAGAGGAAAAATTGCTTCG CGCGATCTTTGGTGAAAAGGCGTCGGACGTTAAAGACACTTCCCTTCGTGTCCCGTCGGGTACATCTGGCACGGTGATTG ACGTTCAAGTGTTCACGCGTGATGGGGTCGAGAAGGATCAGCGAGCACTGCAAATTGAAAATGCAGAGATCGAAAAGTAT CGGAAAGATCTCAATGACGAATTTCGGATCATCCAGATTGCTACTGTACAGCGCCTCAAAAAGGCGTTATTGGATAGGCG CGTAAATGGGGGAGCGGGCTTCAAGCGAGGCGACTCCCTGACCCAAGAGTTGCTCGAAGGGTTGGACAACAGCGCTTTGT TCGAGCTAAGGCTCGCCGATGAAGACGCTGCTGAGTCTCTTGAGAAAGCTAAAGCCTATTTGGATGAAGTGCGCTCTGAG CAAGAGCGCAAGCTTGCGAATAAGAAACGGAAAATCACTACGGGTGACGATCTCGCTCACGGTGTTTTAAAGATCGTCAA GGTGTATCTTGCGATAAAGCGCCGCGTTCAACCTGGCGACAAGATGGCAGGCCGACATGGCAATAAGGGCGTGGTTTCGG TAATTATGCCTATCGAGGACATGCCACACGATGAGAATGGGGTTGCTGTAGACGTCGTGCTTAACCCGTTGGGCGTACCT TCTCGAATGAACGTTGGACAGATTCTTGAAACTCACCTTGGGCTTGCTGCTCGTGGCTTAGGGGAGCGCATCAACCGGAT GCTTGAAGAACAGCGCGAGATCTTTGAGATCCGAGAGTTCTTGGATCGTGTTTACAACGGTGATAAGCAAACCCGTGTAA ACCTTAAGAGCCTTACCGATGACGAGGTGCGGACGCTCGCGACGAATTTGCGAGCAGGTGTGCCGATGGCAACATTGGTA TTTGACGGTGCGAAGGAGCAAGAAATTAAAGAGATGTTGCGTCTCGCAGGTCAGCCAGAAAGCGGCCAAATGGATTTGTT TGATGGCCGTACGGGCGAGAAGTTTAATTGCAAGGTTACCGTCGGATACATGTACATGCTTAAGCTCAATCACTTGGTGG ATGACAAAATGCATGCGCGTTCCACGGGTTCGTATAGCCTTGTGACTCAGCAGCCGTTGGGTGGTAAAGCGCAGTTTGGT GGTCAACGTTTTGGTGAGATGGAAGTCTGGGCGCTCGAAGCATACGGTGCGGCCTACACGCTCCAAGAGATGCTCACGAT TAAGTCAGATGACGTAAACGGAAGAACTCGGGTTTATAAGAATATCGTTGATGGCGATCACCGTATGGAGCCAGGAATGC CAGAATCGTTTAACGTGCTAGTAAAGGAAATTCGCTCGCTGGGAATTGATATTGAACTTGAGCAGGATTGA Protein sequence : MAYSFTEKKRIRKAFGQINDAMDVPYLLAIQLDSYRKFLQLDKLAAGRGDDGLQAAFKSVFPITSYSGSAALEFVEYVLG EPAFDVKECQLRGATYSAPLRVKLRLIIYDKDSPSKAIKDIKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVF FDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDLVYVRIDRRRKLPATVLLRALGYESEQILELFFDTNKVLVESGE FKLELIPERLRGETALFDIKAGDTVVVESGRRITARHIRQLEKAELRSLLVPKEYLVGKVLAKGVIDRSTGEVIAPCNAE VTDELLDKLVGLSVTSFETLYTNELDRGPFLSDTLRTDQTTSALEALVEIYRMMRPGEPPTKDAAEGLFKNLFFSAERYD LSAVGRMKFNRRLGRKETTGEGTLSREDIVAVLKTLVAIRNGQGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAVK ERLSLAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYG RLCPIETPEGPNIGLINSLAAFARANDYGFLESPYRKVTNGRATDEVVFLSAIEESEYMVAQASAELDEEGNLVEDLVPV RHKNEFTVTTTENVEYMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMEGTVARDSGVCV VAKRGGLIDRVDASRIVVRVNEDEITDGEAGVDIYSLTKFTRSNQNTCINQKPLVHVGDRVARNDILADGPSVDIGELAL GQNMRVAFMPWNGYNFEDSIMLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVSESALAKLDEAGVVHIGAE VAAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTSGTVIDVQVFTRDGVEKDQRALQIENAEIEKY RKDLNDEFRIIQIATVQRLKKALLDRRVNGGAGFKRGDSLTQELLEGLDNSALFELRLADEDAAESLEKAKAYLDEVRSE QERKLANKKRKITTGDDLAHGVLKIVKVYLAIKRRVQPGDKMAGRHGNKGVVSVIMPIEDMPHDENGVAVDVVLNPLGVP SRMNVGQILETHLGLAARGLGERINRMLEEQREIFEIREFLDRVYNGDKQTRVNLKSLTDDEVRTLATNLRAGVPMATLV FDGAKEQEIKEMLRLAGQPESGQMDLFDGRTGEKFNCKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG GQRFGEMEVWALEAYGAAYTLQEMLTIKSDDVNGRTRVYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELEQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 73 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 73 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 78 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 73 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 73 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 73 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 73 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 73 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 73 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 73 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 72 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 72 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 72 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 72 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 72 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 71 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| rpoB | YP_003809607.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 47 |
