Gene Information

Name : Toce_1864 (Toce_1864)
Accession : YP_003826217.1
Strain : Thermosediminibacter oceani DSM 16646
Genome accession: NC_014377
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1868248 - 1868952 bp
Length : 705 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: nth:Nther_2084 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: AB

DNA sequence : 
TTGGATACCCTAATAGTTGCCAGAAACTTAAGCAAGGTATACAAAATGGGCGAAGTTACAGTAGAAGCTTTGAGGGGAGT
CAGCTTTGAATTGATGGAAGGCGAAATGGTGGTGGTCCTCGGGCCCAGCGGATCCGGCAAGAGCACCCTGCTCAATATCA
TAGGGGGAATGGATAAGCCGAGCGACGGCGAACTTTTTTACATGGGCACACCTCTCCACAGCTCCGACGGAAAGCAATTG
ACTTCCTATCGCCGAAACGAGGTGGGATTTGTTTTTCAATTTTATAACCTCCTGCCGAACCTGACGGCTCTGGAAAATGT
TCTTCTTTCGGTACAGATAGCCCGAAACCCCCTTTCAGCCGAGGAACTGCTGAAAAAAGTAGGACTTGCCGACCGGGCGC
ACCATTTTCCCTCCCAGTTATCCGGAGGAGAGCAGCAGCGGGTAGCCATAGCTCGAGCCATGGTCAAAAACCCGCGGTTG
CTGCTGTGCGACGAGCCCACCGGAGCTTTAGACTATAAAACGAGCATTCAGGTACTTAAACTGCTTCAGGATTTTTGCTA
TACGTATTCCAAAACGGTAGTTATAATCACCCACAACGCTGCGATAGCCCAGATGGCCCACAGAGTTTTTTATTTAAAAG
ACGGCAGGCTGGACAGAATCGTGGAAAACGAAAACCCGCTGCCGCCGGAGAAGGTGACCTGGTGA

Protein sequence : 
MDTLIVARNLSKVYKMGEVTVEALRGVSFELMEGEMVVVLGPSGSGKSTLLNIIGGMDKPSDGELFYMGTPLHSSDGKQL
TSYRRNEVGFVFQFYNLLPNLTALENVLLSVQIARNPLSAEELLKKVGLADRAHHFPSQLSGGEQQRVAIARAMVKNPRL
LLCDEPTGALDYKTSIQVLKLLQDFCYTYSKTVVIITHNAAIAQMAHRVFYLKDGRLDRIVENENPLPPEKVTW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-34 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Toce_1864 YP_003826217.1 ABC transporter NC_012469.1.7685735. Protein 3e-54 54
Toce_1864 YP_003826217.1 ABC transporter CP001581.1.gene798.p Protein 2e-42 46
Toce_1864 YP_003826217.1 ABC transporter NC_012469.1.7686878. Protein 2e-41 46
Toce_1864 YP_003826217.1 ABC transporter CP001581.1.gene598.p Protein 2e-38 42
Toce_1864 YP_003826217.1 ABC transporter NC_008702.1.4606598. Protein 4e-33 42