Gene Information

Name : Toce_0547 (Toce_0547)
Accession : YP_003824943.1
Strain : Thermosediminibacter oceani DSM 16646
Genome accession: NC_014377
Putative virulence/resistance : Virulence
Product : microcompartments protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 562774 - 563052 bp
Length : 279 bp
Strand : +
Note : COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: tex:Teth514_1955 microcompartments protein; PFAM: microcompartments protein; SPTR: Microcompartments protein; PFAM: BMC domain

DNA sequence : 
ATGAACGGAGAAGCGCTGGGCATGGTAGAGACCAAAGGATTGATCCCCGCTATAGAGGCGGCGGACGCAATGGTGAAGGC
TGCAAACGTCAAGCTCGTTGGGTATGAAAAGATAGGTTCCGGTCTGGTGACGGTGATGGTCCGGGGCGATGTGGGTGCGA
CCAAGGCGGCTACCGATGCAGGTGCGGCTGCGGCCAGAAAAGTAGGAGAGGTCGTCTCGGTCCATGTCATTCCGCGGCCT
CACAGCGATGTGGAAAAAATCCTGCCGAAATCAGAGTAA

Protein sequence : 
MNGEALGMVETKGLIPAIEAADAMVKAANVKLVGYEKIGSGLVTVMVRGDVGATKAATDAGAAAARKVGEVVSVHVIPRP
HSDVEKILPKSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 3e-16 67
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 6e-16 65
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 5e-16 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Toce_0547 YP_003824943.1 microcompartments protein VFG1596 Protein 1e-16 67
Toce_0547 YP_003824943.1 microcompartments protein VFG1597 Protein 3e-16 65
Toce_0547 YP_003824943.1 microcompartments protein VFG1598 Protein 2e-16 64