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Name : PB2503_09394 (PB2503_09394) Accession : YP_003855074.1 Strain : Parvularcula bermudensis HTCC2503 Genome accession: NC_014414 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1878798 - 1882883 bp Length : 4086 bp Strand : + Note : - DNA sequence : ATGGCGCAGAGCTTTGTCGAGAAGAAGCGAATTCGCAAACATTTCGGTCGGATCGGCGACGCCGTTGAGATGCCGAATCT GATCCAGGTCCAGCGGGAAAGCTACGAAGCCTTTCTTCAGCGCTTCGTTCCGGCGATGGACCGCCGTCGCGACGGGCTTG AGGCGGTGTTCAAATCGGTTTTCCCCATCTCCGATTTTACCGACACGGCTCGCCTGCAATATGTGTCCTACGAATTCGAA GAGCCGAAATTCGACGTCGACGAGTGCATGCAACGGGATATGACCTATTCCGCCCCCCTCAAGGTCAAGCTGCAATTGGC TGTCTTTGAGGTCGATGAAGATACCGAGGCCAAATCCCTCAAGGATATCAAAGAACAAGAAGTCTATATGGGCGAATTGC CCCTGATGACGGACAATGGGACGTTCATCATCAACGGCACCGAGCGGGTGATTGTCAGCCAGATGCACCGCAGCCCCGGG GTGTTCTTCGATCACGATAAAGGCAAGACCCATTCGTCCGGGAAATTGCTGTTTGCGGCGCGGATCATTCCCTATCGCGG CTCATGGCTCGATTTCGAGTTCGACCCAAAAGATATCATCAATGTACGGATCGACCGTCGTCGCAAACTGCCGGCGACGA CCCTGCTTTATGGCCTTGGATACGACCAAGAAGATATCCTCGACTTATTCTATCACTCGGTGACCCATGATGCGGTCGAG GGGGGATTCTCCACGACCTTTGATCCTGAAAAGCTCAAGGGCACGAAGTCCGAGCGGGATCTGGTGGATGCCGCCACCGG CGAAGTAGCAGTCGAAGCCGGCAAGAAGATCACGGCCCGTACGATCAAGCAGCTTGAGGAGGGCGGCGTTAAACGCTTCC TTCTGAGCCCTGAGCAGATGGTTGGGCGGTATATCGCCAAGGACCTCGTCAATCGCGAGACCGGCGAGATTTATGCCGAA GCCGGGGACGAAATCGACGAGGATGTGCTGGCTGAGCTCGCTGAGCGGGGGATTGACAGCTTCGAGACCCTCGACATCGA TCACATCAACACCGGCGGCTATATCCGCAACACATTGGCGGCGGATAAGAACCGTAATCGGGACATGGCGCTGATCGATA TCTACCGCGTCATGCGTCCAGGTGAGCCGCCGACCCTTGAGACCGCCGAAGCGTTGTTCAGCGGCTTGTTCTTCGATGAG GAGCGCTACGACCTGTCGGCCGTGGGGCGGGTCAAGATGAATATGCGCCTGGGCTTTGAGGATGTCTCCGACGAGCAACG GACGCTGCGTCGTGAAGACATCATCGAGGTGTTGCGGGTCCTGGCCGGCCTTCGGGATGGCAAGGGCGAGATCGACGATA TCGACAATCTCGGCAATCGCCGGGTGCGGAGTGTCGGCGAGTTGATGGAAAACCAGTATCGCATCGGTCTGTTGCGGATG GAGCGGGCGATCAAAGAACGCATGAGCTCGGTCGAAATCGACAACATCATGCCGAACGATCTGATCAATGCGAAACCGGC CGCCGCGGCGGTGCGCGAATTCTTCGGCTCCTCGCAGCTCAGTCAGTTCATGGACCAGACCAATCCGTTGTCCGAGATTA CCCACAAGCGGCGTATGTCGGCGCTGGGGCCCGGAGGGCTGACTCGGGAACGCGCCGGGTTTGAGGTGCGCGACGTGCAC CCCACCCATTATGGGCGGATTTGCCCCATCGAAACCCCCGAAGGACCGAATATCGGGCTCATCAACTCTCTCGCGACCCA CGCCAAGGTCAACAAATACGGCTTTATCGAGAGCCCTTATCGTAAGGTCGAAAATGGGGTCCCCACGGATGAGGTGGTGT ATCTCTCCGCCGTGGAGGAGAGCCGCTATAATATCGCCCAGGCGAATGCTGAAATCGACGAGGATGGGCGCCTGGCGAAT GAGTTCGTCAACTGCCGGGCCGGGGCCCTTCGTGACGCCATGCTCGTGCCGCGGGAAGAGGTTGATTATATCGACGTCTC GCCGAAGCAGCTTGTCTCCGTCGCCGCGGCGCTCATTCCGTTCCTCGAAAACGATGACGCGAACCGCGCGCTGATGGGCT CGAACATGCAACGCCAGGCGGTGCCTCTCCTCCAGGCCGAGGCTCCCTATGTTGGGACCGGCATGGAAAAAGTCGTGGCT CGTGATTCAGGGGCGGCCATTGCGGCACGCCGTTCTGGTTTCGTTGAGCAGGTTGACGCACAGCGGATCGTCATTCGGGC CACCGAGGAGACCGACACCACCAAGCCTGGGGTCGATATCTATAATCTCCGCAAATTCCAGCGATCGAACCAGAATACCT GTATCACGCAGCGTCCGCTGGTGAAGATCGGTGATATTGTCGAGGCCGGGGACATCGTCGCCGATGGACCGTCGACTGAC CTTGGTGAGCTGGCCCTCGGCAAGAATGTGCTGGTCGCCTTCATGCCCTGGAATGGCTATAATTTCGAAGATTCGATCCT GATCAGTGAGCGGATCGTGCGGGACGATGTCTTCACCTCGATCCACCTTGAGGAGTTTGAGATCGCCGCTCGGGACACCA AGCTGGGCCCTGAAGAGATCACCCGCGATATTCCGAACGTGTCGGAAGAAGCCCTCCGCAATCTCGATGAGGCGGGTATC GTTTCGATCGGGGCCGAGGTGCATCCGGGGGATATTCTGGTCGGGAAGATCACCCCGAAGGGCGAGAGCCCGATGACGCC GGAGGAGAAACTCCTGCGCGCGATCTTTGGGGAAAAAGCCGCCGATGTGCGTGACACGTCCCTCAAACTCCCCCCCGGCG TTGCCGGCACGGTGGTCGAGGTGCGGGTCTTTAACCGTCATGGCGTCGAGAAAGACGAGCGGGCGATCGCTATCGAGCGT GAAGAGATCGATCGCCTCGCAAAGGACCGTGACGACGAGCTGGCGATCCTTGAGCGGAATATTTTTGGCCGCCTTGAGGA CATGCTGGTCGGCGCCGAGGCCGTGTCCATGCCGAAGGGCTTTGACAAGGGGACTGTCACCAAGGAGCAGCTCAAGGAAA TGGGCCGCACACTTTGGTGGAAGATCGGCCTCGCCAATGAAGCGGCGATGGGCGAAATCGAAGGCCTGCGGAAGCAATAT GATGAGAGCCGCGCCCGGCTCGAAGCGCGGTTTGAGGACAAGGTCGAAAAACTGCAGCGGGGGGATGAATTGCCCCCAGG CGTGATGAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGTAAGCTTCAGCCCGGCGATAAAATGGCCGGTCGGCACGGGA ATAAAGGGGTCATCTCGAAGATCGCCCCGATGGAAGACATGCCATTTCTTGAAGACGGCACCCCGGTTGATATCGTGCTG AACCCCCTCGGCGTTCCCTCACGGATGAATGTCGGACAGATCCTCGAGACCCATTTGGGCTTTGCCTGCCGCGGCCTTGG TCGCCAGATCGGCGATGCCCTCGAATATTGGGAACGCGATGAGAGCAAAAAGGATGAGTACATCCAGGAGCTCAAGACCG TTTATGGCGATGATCAGGAACTGCCGACGGACGAATACGAGCTCAAGGAATTGGGCCGAAATCTCGTCCGCGGTGTGCCC ATCGCCACCCCGGTGTTCGATGGCGCCCGGGAGGCGGAGATCATTGAGATGCTGCAAAAGGCGGGCTTTAACGAGTCCGG CCAGGTGGAGCTCTACGATGGGCGGACGGGGGACAAATTCGCCCGACCGGTGACCGTGGGATACAAATACCTTCTGAAGC TTCACCACCTGGTGGACGACAAGATCCACGCGCGGTCGATCGGGCCGTACTCCCTCGTCACCCAGCAGCCGCTGGGCGGG AAGGCGCAGTTCGGCGGCCAGCGCTTCGGTGAAATGGAAGTCTGGGCGCTTGAGGCCTATGGCGCCGCCTATACGCTGCA AGAAATGCTGACGGTGAAGTCCGATGACGTCGCCGGACGGACCAAGGTCTATGAGGCCATCGTTCGCGGGGATGACAGCT TTGAGGCGGGGATCCCGGAGAGCTTCAACGTTCTTGTGAAGGAAATGCGGTCGCTTGGCCTCAATGTGGAACTGCAAAAT AGGTGA Protein sequence : MAQSFVEKKRIRKHFGRIGDAVEMPNLIQVQRESYEAFLQRFVPAMDRRRDGLEAVFKSVFPISDFTDTARLQYVSYEFE EPKFDVDECMQRDMTYSAPLKVKLQLAVFEVDEDTEAKSLKDIKEQEVYMGELPLMTDNGTFIINGTERVIVSQMHRSPG VFFDHDKGKTHSSGKLLFAARIIPYRGSWLDFEFDPKDIINVRIDRRRKLPATTLLYGLGYDQEDILDLFYHSVTHDAVE GGFSTTFDPEKLKGTKSERDLVDAATGEVAVEAGKKITARTIKQLEEGGVKRFLLSPEQMVGRYIAKDLVNRETGEIYAE AGDEIDEDVLAELAERGIDSFETLDIDHINTGGYIRNTLAADKNRNRDMALIDIYRVMRPGEPPTLETAEALFSGLFFDE ERYDLSAVGRVKMNMRLGFEDVSDEQRTLRREDIIEVLRVLAGLRDGKGEIDDIDNLGNRRVRSVGELMENQYRIGLLRM ERAIKERMSSVEIDNIMPNDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRMSALGPGGLTRERAGFEVRDVH PTHYGRICPIETPEGPNIGLINSLATHAKVNKYGFIESPYRKVENGVPTDEVVYLSAVEESRYNIAQANAEIDEDGRLAN EFVNCRAGALRDAMLVPREEVDYIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLQAEAPYVGTGMEKVVA RDSGAAIAARRSGFVEQVDAQRIVIRATEETDTTKPGVDIYNLRKFQRSNQNTCITQRPLVKIGDIVEAGDIVADGPSTD LGELALGKNVLVAFMPWNGYNFEDSILISERIVRDDVFTSIHLEEFEIAARDTKLGPEEITRDIPNVSEEALRNLDEAGI VSIGAEVHPGDILVGKITPKGESPMTPEEKLLRAIFGEKAADVRDTSLKLPPGVAGTVVEVRVFNRHGVEKDERAIAIER EEIDRLAKDRDDELAILERNIFGRLEDMLVGAEAVSMPKGFDKGTVTKEQLKEMGRTLWWKIGLANEAAMGEIEGLRKQY DESRARLEARFEDKVEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKIAPMEDMPFLEDGTPVDIVL NPLGVPSRMNVGQILETHLGFACRGLGRQIGDALEYWERDESKKDEYIQELKTVYGDDQELPTDEYELKELGRNLVRGVP IATPVFDGAREAEIIEMLQKAGFNESGQVELYDGRTGDKFARPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGG KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDSFEAGIPESFNVLVKEMRSLGLNVELQN R |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 61 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 61 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 61 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 61 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 60 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 60 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 60 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 59 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 58 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 49 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 48 |
| PB2503_09394 | YP_003855074.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 48 |
