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Name : hrcC (Dda3937_04208) Accession : YP_003883223.1 Strain : Dickeya dadantii 3937 Genome accession: NC_014500 Putative virulence/resistance : Virulence Product : type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 2636198 - 2638267 bp Length : 2070 bp Strand : - Note : E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response DNA sequence : ATGCGTAACGCACTGTATGCACTATTGTTCAACCTCTACCGCCTGTTCTGCTGGTCGCTGGTGCTGATGGGGATGTTGCC CATCGCGCACGCGGCGACGCCGCCCGACTGGAGCAAAGGCGCGTATGCCTATTCCGCCGAACAGACGCCGCTGTCGGCGG TGTTGCAGGATTTCGCCAATAGCCACGGCGTCGATCTGGTGCTGGGCAACATTCAGGACATTAACGTCGAGGCCAAAATC CGCGCCGACAATGCGGTGGCGTTTCTGGACCGGCTGGCGCTGGAGCACCGTTTTCAGTGGTTCGTCTACAACAATGTGCT GTACGTCAGCCCGCAGGATGAGCAGACATCGGTGCGCATTGAAGTGTCGCAGGATGCGGCGCCGGATATGAAACAGGCGC TGACCGGCATTGGCTTGCTGGATTCGCGTTTTGGCTGGGGAGAACTGCCGGAAGAGGGCGTGGTGCTGGTCACCGGCCCG GCGGAGTACGTCAACCTGATCCGTAACTTCAGCCAGCAACGCGAAACCAAGGAAGATCGCCGCAAAGTGATGATTTTTCC GCTGCGTTATGCCTCGGTGTCGGATCGCACCATTCAGTATCGCGATCAACGTCTGGTGATCCCCGGCGTGGCGACCATTC TGAATGAATTGATGGATGGCAACCGGAACACACCTGCCGGCGCGTCGGCCGCCGCCAGCGGCATGGGCAACGACGGCGCG ATGGCGGCGGCCAGCGGCGGCGGGCAAGATGCCAGTCAGGCGATTGAACTCAATGCCCGCGCCATGCTGGCCCGGTTGGC TACACGATCCAGCGGTGGCGCGACGGCCGCCGCCCGTAAAAAAGATCAACTTAACGGCAAGGTATCGGCGGATGTGCGTA ACAACGCGCTGCTGATCCGCGACGACGAAAAGCGCCGGGATGAATACCAGCAACTGATCGACAAGATCGACGTGCCGCAA AATCTGGTCAATATCGACGCGATCATCCTGGATGTCGATCGCACCGCGCTTTCCCGGCTGGAGGCCAACTGGCAAGGCAA ACTGGGCGCGGTCACCGGCGGCGCCAACATGATGTCTGGCTCCAGCACGCTGTTTGTCAGCGATTTCAAACGCTTCTTCG CCGATATTCAGGCGCTGGAAGGGGAGGGCACCGCGTCGATTGTCGCCAATCCGTCGGTGCTGACGCTGGAAAACCAGCCC GCGGTGATCGATTTCAGCCGCACCGCCTTTATCACCGCCACCGGTGAGCGGGTGGCTAATGTGCAGCCGGTGACCGCCGG CACCAGTCTGCAGGTAACGCCGCGCGTGGTCGGCCGCGGCAGCCTGAGCAGCATTCAACTGGTGATCGACATTGAAGACG GCCAGGTGGAAACCAATACCGAAGGCACCGCCTCCGGCGTGAAGCGCGGCACCGTCAGCACGCAGGCGTTGATCGGCGAG AACCGGGCGCTGGTGCTGGGTGGGTTCCACGTGGAAGAGAGCGGCGATCGTGATAAGCGCGTGCCGCTGCTGGGCGATAT TCCCTGGATCGGCAAACTGTTCACCTCGCGCCAGCATGAAGTGTCTCGCCGCGAACGGCTGTTCATTCTTACCCCGCACC TGATTGGCGATCAGAACGATCCCACCCGATTCGTGTCGGCGGATAACCGTCGCCAGCTCAACGACGCCATGGGGCGCGTG GCGCAGCGCAACAGCAAAACCGATCTGTTCAGCGTGGTTGAGAGCGCCATGCGCGAACTGGCCAGCGGCCAGACGCCCGC CGGATTCACCATCGACGGCAGTGGGGCGCGTCTGTCGGAGTTTTGCCGCACGTCGCCGTCGCTGAGTTATCAGAGCAACC GGCATCAGTGGTACAGCAATTTGACCCTCAGTCTGGCGGTGGGGGTGGTGAAAAACATTGGTACTCGCCCTCAGCGCTTT GACGAAGCCAACTGCGCCAGCAGTCGCACGCTGGCGGTGGCCGCGTGGCCGAAAACCACGCTGGCGCCCGGCGAATCCAC CGAGGTGTATCTGGCGCTGTTACCGGCCAAAAACGCGCAGCCATCACGCGCGTCACTGATTAAACCCTGA Protein sequence : MRNALYALLFNLYRLFCWSLVLMGMLPIAHAATPPDWSKGAYAYSAEQTPLSAVLQDFANSHGVDLVLGNIQDINVEAKI RADNAVAFLDRLALEHRFQWFVYNNVLYVSPQDEQTSVRIEVSQDAAPDMKQALTGIGLLDSRFGWGELPEEGVVLVTGP AEYVNLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVIPGVATILNELMDGNRNTPAGASAAASGMGNDGA MAAASGGGQDASQAIELNARAMLARLATRSSGGATAAARKKDQLNGKVSADVRNNALLIRDDEKRRDEYQQLIDKIDVPQ NLVNIDAIILDVDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQP AVIDFSRTAFITATGERVANVQPVTAGTSLQVTPRVVGRGSLSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGE NRALVLGGFHVEESGDRDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMGRV AQRNSKTDLFSVVESAMRELASGQTPAGFTIDGSGARLSEFCRTSPSLSYQSNRHQWYSNLTLSLAVGVVKNIGTRPQRF DEANCASSRTLAVAAWPKTTLAPGESTEVYLALLPAKNAQPSRASLIKP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcC | AAB49179.1 | HrcC | Virulence | Hrp PAI | Protein | 0.0 | 68 |
| hrcC | AAT96354.1 | HrcC | Virulence | S-PAI | Protein | 3e-167 | 54 |
| hrcC | AAT96315.1 | HrcC | Virulence | S-PAI | Protein | 5e-165 | 54 |
| hrcC | ABA47303.1 | HrcC | Virulence | S-PAI | Protein | 1e-168 | 53 |
| hrcC | AAT96274.1 | HrcC | Virulence | S-PAI | Protein | 8e-165 | 53 |
| hrcC | AAT96206.1 | HrcC | Virulence | T-PAI | Protein | 2e-140 | 45 |
| hrcC | AAT96152.1 | HrcC | Virulence | T-PAI | Protein | 9e-140 | 44 |
| hrcC | AAC34756.1 | HrcC | Virulence | Hrp PAI | Protein | 7e-133 | 43 |
