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Name : secD (HELO_1400) Accession : YP_003896468.1 Strain : Halomonas elongata DSM 2581 Genome accession: NC_014532 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 457357 - 459207 bp Length : 1851 bp Strand : - Note : protein-export membrane protein secD - Pseudomonas aeruginosa,InterPro: SecD export membrane protein, High confidence in function and specificity DNA sequence : ATGCTCAACCGTTACCCCCTGTGGAAGTATCTGCTGATACTCCTCGTCCTCGTCGTCGGCCTGATCTACGCTCTTCCCAA CCTCTTCCCCGAGGATCCGGCGGTACAGATCAGCAGTGACCGCGGCGAATTCACCCTCGACGAACGACGGCTCGACCGCC TCGAGGATTCCCTCGATGAAGCGGGCATCGCCACGCAAGCCATCGAGCGCCAGCCCCAGAGCGTCCTGATCCGGCTTCGC CACGCCGACGACCAGATCAGAGCACGTGATCTGCTCGGCGACTCGCTCGGCGAAGACTATGTCGTGGCGCTGAACCAGGC CGAATCCACGCCCGCCTGGCTGGAATCACTGGCCGCCTCGCCCATGACGCTGGGCCTCGACCTGCGCGGCGGCGTGCACT TCCTGCTCGAAGTCGACATGGAAGCCGCCATCACCCAGCGCCTGGAATCGGATGCCAGCGCCATGCGCAACCTCCTGCGC GACGAGCGACTGCGCTATCGCAACACCGAGCTCGGCGAGCGCTCGATCAGCATGGACTTCATGAACGCCGAGGATCGTGA CCAGGCTCGGCAACTGATCGCCCCCGAATATCCCGATTTCGACTACAGCAACGTCGAGAAGACGCGTGGCGCCGGCCTGG AGATGACCCTGACCGACACCGCCGTCAACGAGATTCAGGACTATGCGGTCAACCAGAACCTGACCACGCTGCGCAACCGC GTCAACGAGCTGGGCGTGTCCGAGCCGCTGGTGCAACGTCAGGGACCGAATCGCATCGTCGTCGAGCTGCCCGGCGTTCA GGACACCGCCGCCGCCAAGCGCATCATCGGCGCCACGGCCAACCTGGAGTTCCGCCTCGAGGCACGCCCCGACACGCCGG AGTCCGAAACCGAGACCTTCCCGTTCCGCGACAATGAAGCCCGCACCGCGACCCTGATGCGCGACGTGATCATCACCGGC GACCGGGTTTCGAATGCCAATCGCAGCTTCGATGAAAACGGCCGCCCTCAGGTCAACATCAGCCTCGACGGTACCGGCGG CACTCTGATGAACCGTGCCACCCGCACCAACATCGGGCGCAACATGGCGGTGCTGTTCATCGAGCACAATTCCCGCGAGC GCACGGTGATGAAGGACGGCGAGCCCACCACCGTACGTACGCAGGACACCGAACGCGGCATCATCAGCCTGGCCACCATC CAGAGCGCGCTGGGCAACAGCTTCCGCATCACCGGCCTGGAGTCGCCCACCGAGGCGGCCGATCTGGCACTGCTGCTGCG CTCCGGCTCCTTGGCCGCACCGATGTACTTCGCACAGGAACGCACCATCGGGCCAAGCCTCGGCGCCAAGAACGTCGAGC GCGGCATTCTGTCCGTTCAGGTCGGCCTGCTGCTGGTGGTGCTGTTCATGCTGGTGCGCTACCGAGTGTTCGGGGTGTTC GCCAATCTCGCCCTCGGGTTCAACCTGACCCTGCTCGTCGCGGTCATGTCGATGCTCGGCGCCACCCTGACCCTGCCGGG CATCGCCGGTATCGTACTGACGCTGGGGATGGCGGTGGATGCCAATGTGCTGATCTTCGAGCGCATCCGCGAGGAACTGC GTAACGGGCTCTCGGTCCAGCAAGCCATTCACGCCGGTTACGAGCGCGCCTTCTCGTCGATCGTCGACGCCAACATCACC ACCCTGCTGGTGGCGTTGATCCTGTTCTCGATCGGCACCGGGCCGGTCAAGGGCTTCGCCGTGACGCTGTCACTGGGCAT TTTGACCTCGCTGTTCACCGCACTGATGGTGACCCGCGCCATGGTCAATCTGTGCTACGGCGGCAAGCCGGTCAAGAAGC TCTGGATATAA Protein sequence : MLNRYPLWKYLLILLVLVVGLIYALPNLFPEDPAVQISSDRGEFTLDERRLDRLEDSLDEAGIATQAIERQPQSVLIRLR HADDQIRARDLLGDSLGEDYVVALNQAESTPAWLESLAASPMTLGLDLRGGVHFLLEVDMEAAITQRLESDASAMRNLLR DERLRYRNTELGERSISMDFMNAEDRDQARQLIAPEYPDFDYSNVEKTRGAGLEMTLTDTAVNEIQDYAVNQNLTTLRNR VNELGVSEPLVQRQGPNRIVVELPGVQDTAAAKRIIGATANLEFRLEARPDTPESETETFPFRDNEARTATLMRDVIITG DRVSNANRSFDENGRPQVNISLDGTGGTLMNRATRTNIGRNMAVLFIEHNSRERTVMKDGEPTTVRTQDTERGIISLATI QSALGNSFRITGLESPTEAADLALLLRSGSLAAPMYFAQERTIGPSLGAKNVERGILSVQVGLLLVVLFMLVRYRVFGVF ANLALGFNLTLLVAVMSMLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELRNGLSVQQAIHAGYERAFSSIVDANIT TLLVALILFSIGTGPVKGFAVTLSLGILTSLFTALMVTRAMVNLCYGGKPVKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-159 | 58 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-159 | 58 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-159 | 58 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-159 | 58 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-159 | 58 |
