Gene Information

Name : BC1003_5735 (BC1003_5735)
Accession : YP_003910939.1
Strain :
Genome accession: NC_014540
Putative virulence/resistance : Virulence
Product : type VI secretion protein, VC_A0107 family
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 2520778 - 2521326 bp
Length : 549 bp
Strand : +
Note : KEGG: bpy:Bphyt_4913 type VI secretion protein, VC_A0107 family; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301

DNA sequence : 
ATGGCGAAGAAAGAAAGCATACAAAAACGCTTGCAGAAAGTGCGGCCGCCCCGCGTGCAGCTCACCTATGAGGTCGAGCG
CGGCGATGCGATCGAAGTGAAGGAACTGCCGTTCGTGGTCGGCGTGGTGGCCGATCTCGCCGGGCAGTCCGAAGTCGAGC
AGCCCAAGCTGCGCGACCGCAAGTTCGTCAACATCGATCGCGACAATTTCGACGACGTGATGAAGGCGATCGAGCCGCGC
GCGGCCTTTCAGGTGGAAAACCGTCTGAGCGAAACCGGCGGCAAATTCGCGGTCGATCTGCGGTTCAAGTCGATGGCCGA
TTTCAATCCGGACGAGGTGGTCGCGCAAATCGAACCGCTGCGCCGTCTGCTTGAAGCTCGCTCGAAGCTCGCAGATTTGC
GCAACAAGCTTGCCGGCAATGACAAGCTCGAAGACCTGCTTTCCGAAGTGCTCAACAACACGCAGCAGTTGCAGGCACTG
GCAAAAGACCAGGGCAATGCGGCGGACCGGGACGGCGGCGCGCCGGATCACGACAAGCAAGGCGAATAA

Protein sequence : 
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEVKELPFVVGVVADLAGQSEVEQPKLRDRKFVNIDRDNFDDVMKAIEPR
AAFQVENRLSETGGKFAVDLRFKSMADFNPDEVVAQIEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLNNTQQLQAL
AKDQGNAADRDGGAPDHDKQGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0297 NP_454879.1 conserved hypothetical protein Not tested SPI-6 Protein 7e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1003_5735 YP_003910939.1 type VI secretion protein, VC_A0107 family VFG2069 Protein 3e-27 43