Gene Information

Name : BC1003_6061 (BC1003_6061)
Accession : YP_003911248.1
Strain :
Genome accession: NC_014540
Putative virulence/resistance : Virulence
Product : RNA polymerase, sigma-24 subunit, ECF subfamily
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2910461 - 2911012 bp
Length : 552 bp
Strand : +
Note : KEGG: bcm:Bcenmc03_6117 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein

DNA sequence :

ATGAGCAAAGTTTCAAATACATTACTGCCGGCGGCGAAGCTACTTTTGGGCGAAGAACCTGCTCGTTCGCGCGCTGCCTG
GCTCGCAGATGAGTTTCGGTCCAGCTACGGTTGGTTGAAATCAAAACTGCATCGACGTCTCGGTTCGGCGACCGACGCAG
AAGATCTTGCGTCGTCTTCGTTTGCCGAACTTGCCGCGCTTGAAGATCTTGGCACGGTGCGCGAGCCCAGGGCGCTTTTA
ACGGTCATCGCACAACGGCTGACTTACGAGCTGTGGCGGCGCCGGGACCTCGAACGCGCGTACCTTGATTGTCTTGCGAG
TCAAGACGAACCCGTCGCGCCGTCGGCGGAGTCGATCGTGGAAGTCTCCCAGGCCCTTGCGCTAATCGACCAGGCGCTTG
ACGGGCTGTCGTCGAAAGCCAAGAGCGCGTTCATATATAGCCAGATAGACGGCCTGACCTATGCGGAAATCGCCTCACTT
CTGGGCGTATCGTCCAGCATGGTTCGCAAATACATTGCCCAAGCGCTTACCCGATGCTACATGATAGGTTGA

Protein sequence :

MSKVSNTLLPAAKLLLGEEPARSRAAWLADEFRSSYGWLKSKLHRRLGSATDAEDLASSSFAELAALEDLGTVREPRALL
TVIAQRLTYELWRRRDLERAYLDCLASQDEPVAPSAESIVEVSQALALIDQALDGLSSKAKSAFIYSQIDGLTYAEIASL
LGVSSSMVRKYIAQALTRCYMIG

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	2e-22	48

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
BC1003_6061	YP_003911248.1	RNA polymerase, sigma-24 subunit, ECF subfamily	VFG1049	Protein	7e-23	48