Gene Information

Name : BC1003_4195 (BC1003_4195)
Accession : YP_003909422.1
Strain :
Genome accession: NC_014540
Putative virulence/resistance : Virulence
Product : type VI secretion ATPase, ClpV1 family
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 763938 - 766748 bp
Length : 2811 bp
Strand : -
Note : TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: xcv:XCV4236 ClpB protein; SMART: AAA ATPase

DNA sequence :
ATGGCCGAGATCAGTCGCGGCGCGCTGTTCGGCAAGCTCAATTCGCTTGCCTACCGGAGCATCGAAAGCGCCACCGTGTT
TTGCAAACTGCGCGGCAACCCGTACGTCGAGATGGCGCATTGGGTGCATCAGATCCTGCAATTGCAGGACTCCGACCTGC
ACCGTATCGTCAGGCACTTCGACGTGGACCCGTCGAATCTCGCTCGCGATCTGACCGCGGCGCTCGAGCGTCTGCCGCGC
GGCAATACGACGATCAGCGATCTCTCCGCCGACGTGGAGGAAACCGTCGAGCGCGCCTGGGTCTTCGCCACGCTGATGTT
CGGCGAGGCTCAGGTTCGCACGGGCTATCTGCTCGTCGGCGCGCTGCGCACGCGCCATTTGCGCAACGCGCTGCACGCGT
TGTCCGCCGAATTCGCCAAAGTGAAGGCGGAGGCGCTGGCGGATGCGTTCGGTGAGATCGTCGCGGGATCGCCGGAAGAC
CGCCTCGAGGCGACCGACGGTTTCCGTTTGGGGCCGGCGCCCGCGCCTGGCGAGAACAGCGGCTCGATTGCGCCGGCGCA
GATGGGCAGACAGCAGGCGTTGCAGCAATTCACAGTCGATCTGAGCGCCCAGGCGCGCGAGGGCCGGCTCGATTCTGTGA
TCGGGCGCGACGGCGAGATTCGCCAGCTCATCGACATACTCATGCGCCGCCGCCAGAACAACCCGATGCTGGTGGGCGAG
GCGGGCGTCGGCAAGACCGCCGTTGTCGAGGGCTTTGCGCTGCGGATCGCGGGCGGCGACGTGCCGCCGGCGCTCAAGGA
CGTGGTGGTGCGCACGCTCGATGTCGGGTTGTTGCAGGCCGGCGCCAGCATGAAGGGCGAGTTCGAAAACCGGCTGCGGC
AGGTGATCGACGAAGTTCAGGCGTCGCCGAGGCCAGTGATTCTCTTTATCGACGAGGCGCACACACTGGTCGGCGCGGGC
GGCGCGGCCGGCACCTTGGACGCGGCGAATCTGCTCAAGCCGGCGCTTGCGCGAGGCACGCTGCGCACGATCGGCGCGAC
GACATGGGCCGAGTATCGCAAGCACATCGAAAAGGACCCGGCCTTGACGCGGCGGTTCCAGACGGTGCCCGTCGACGAGC
CCGATGAAGAAAAGGCCATTCTGATGATGCGCGGTGTCGCGAGCGCGATGGAACAGCATCACCGGGTGCAGATTCTCGAC
GAGGCGCTCGAAGCGGCCGTCGCGCTGTCGCATCGTTATATTCCTGCGCGCCAGTTGCCGGACAAGTCGGTGAGCCTGCT
CGACACGGCTTGTGCGCGGGTGGCGATCAGCCAGCATGCGACGCCTGCCGAAATCGACGACATGTCCAAGCAGATCGAGG
CGTTGGAGACCGAACAAAAAATCATCGAGCGCGAAAAAAGCGTGGGTATCGACGTGAACGAGCGCGAGGCACGCGTCGCG
CTTGCACTCGAGACAGCACGCGCGCGCCGCTCGCAACGCGAGTCGGAATGGGCCGGAGAAAAAGCGCTGGTGGAGCGGAT
TCTGACGCTGCGTGCGCAACTGCGCGGCGGTAGTGCCGCGGTCGATAAAGCGAGTGAAGGTGTCGCGCGGCCGGCAGAGG
CCGAGGCGGACGGGATCACGCAAACGGGTACGGCCTCGGCGCCTGCGTTCGCAGATGCGCCCGCGCCCGACTCTTCCACG
CAGGCGGACATGCTTGCAGAGCTCAAGCGGCTGCAAGCCGAGCTCGCCGGACTCCAGGGCGAGTCTCCGTTGATCCTGCC
GAGCGTCGATTATCAGGCGGTCGCCTCGGTCGTCTCGGATTGGACCGGCATTCCCGTCGGGCGAATGGTGCGCAGCGAAC
TGAAGACCGTGATGAATCTGGCGACCGTGTTGGGCGAGCGCGTGATCGGCCAGGACCATGCGATGGAAGCAATCGCAAAG
CGCATTCAAACCTCGCGCGCCGGCCTCGACAATCCCGATCGTCCGGTTGGCGTGTTCATGCTCGCGGGCACCTCCGGCGT
CGGCAAGACCGAGACCGCGCTGGCACTGGCCGAGGCGCTGTACGGCGGCGAGCAGAACCTCATCACGATCAACATGAGCG
AGTTCCAGGAGGCGCACACGGTGTCCACGCTCAAGGGCGCGCCGCCGGGCTATGTCGGCTACGGCGAGGGCGGCGTGCTG
ACAGAAGCGGTGCGTCGCAAGCCGTATTCCGTGGTGCTGCTCGACGAGATCGAGAAGGCGCATCCGGACGTGCACGAACT
GTTCTTCCAGGTCTTCGACAAGGGCGTGATGGAAGACGGCGAAGGCCGCTCGATCAACTTCCGCAACACGCTGATTCTGC
TGACGACGAACGTCGGCACCGAGCGGATCGCACAGCTTTGCAGCCGCCCGACCGCCATGCCGGATGCCGAGGCGCTCGCA
AAGGCGCTGCGCGAGCCGTTACTGGACGTGTTTCCGCCCGCGCTGCTCGGCCGGCTCGTCGCGATTCCGTACTTCCCGCT
CAGCGTTGACATGCTGGCGCGAATCGTCACGCTGCAGATAAACCGCATCAAGCGTCGCGTGGAGGAGCGCTACCGCGTGG
CGTTCGACTATGACGACGAGGTTGTTCGCCTGATCGTCGGGCGCTGCACCGAGAGCGAATCCGGCGGCCGGATGATCGAC
GCAATACTGACCAACACCATGCTGCCCGCAATCAGCCGCGAGTTCCTTGCGCGGTTGATCGACGGCGGCGCTATCGGGCA
GGTTCGCGTGAGCGTGGAGCAAGGCGATTTCGCGTATTCGTTCGACGCGTGCGCGCCGGCTGTCACTGCGCCTGCCGATG
CGCTGGCATAG

Protein sequence :
MAEISRGALFGKLNSLAYRSIESATVFCKLRGNPYVEMAHWVHQILQLQDSDLHRIVRHFDVDPSNLARDLTAALERLPR
GNTTISDLSADVEETVERAWVFATLMFGEAQVRTGYLLVGALRTRHLRNALHALSAEFAKVKAEALADAFGEIVAGSPED
RLEATDGFRLGPAPAPGENSGSIAPAQMGRQQALQQFTVDLSAQAREGRLDSVIGRDGEIRQLIDILMRRRQNNPMLVGE
AGVGKTAVVEGFALRIAGGDVPPALKDVVVRTLDVGLLQAGASMKGEFENRLRQVIDEVQASPRPVILFIDEAHTLVGAG
GAAGTLDAANLLKPALARGTLRTIGATTWAEYRKHIEKDPALTRRFQTVPVDEPDEEKAILMMRGVASAMEQHHRVQILD
EALEAAVALSHRYIPARQLPDKSVSLLDTACARVAISQHATPAEIDDMSKQIEALETEQKIIEREKSVGIDVNEREARVA
LALETARARRSQRESEWAGEKALVERILTLRAQLRGGSAAVDKASEGVARPAEAEADGITQTGTASAPAFADAPAPDSST
QADMLAELKRLQAELAGLQGESPLILPSVDYQAVASVVSDWTGIPVGRMVRSELKTVMNLATVLGERVIGQDHAMEAIAK
RIQTSRAGLDNPDRPVGVFMLAGTSGVGKTETALALAEALYGGEQNLITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVL
TEAVRRKPYSVVLLDEIEKAHPDVHELFFQVFDKGVMEDGEGRSINFRNTLILLTTNVGTERIAQLCSRPTAMPDAEALA
KALREPLLDVFPPALLGRLVAIPYFPLSVDMLARIVTLQINRIKRRVEERYRVAFDYDDEVVRLIVGRCTESESGGRMID
AILTNTMLPAISREFLARLIDGGAIGQVRVSVEQGDFAYSFDACAPAVTAPADALA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 0.0 50
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-133 42
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 2e-133 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1003_4195 YP_003909422.1 type VI secretion ATPase, ClpV1 family VFG2076 Protein 0.0 70