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Name : rpoB (Pvag_3467) Accession : YP_003933039.1 Strain : Pantoea vagans C9-1 Genome accession: NC_014562 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 3670988 - 3675016 bp Length : 4029 bp Strand : + Note : DNA-directed RNA polymerase, subunit beta/140 kD subunit DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAACGTCCGCAAGTACTGGACATACCTTATCT CCTTTCCATCCAGCTCGACTCGTTCCAGAAGTTTATCGAGCAAGATCCAGAAGGTCAGTACGGACTGGAAGCTGCATTCC GCTCTGTATTCCCTATTGCGAGCTACAGCGGCAACTCTGAGTTGCAGTATGTCAGCTACCGCCTGGGTGAACCTGTCTTT GACGTGAAAGAGTGTCAGATCCGTGGCGTGACCTATTCGGCACCGCTGCGCGTGAAACTGCGTCTGGTGATCTATGAGCG CGAAGCGCCAGAAGGCACCGTAAAAGACATTAAAGAACAAGAAGTCTACATGGGCGAGATTCCGCTCATGACCGACAACG GTACCTTTGTTATCAATGGTACCGAGCGCGTTATCGTTTCTCAGCTGCACCGTAGTCCCGGCGTGTTCTTTGATAGCGAT AAGGGTAAAACCCACTCATCGGGTAAAGTGCTGTACAACGCACGTATCATCCCTTACCGCGGTTCATGGCTCGACTTTGA GTTTGACCCGAAAGATAACCTGTTTGTCCGTATTGACCGTCGTCGTAAGCTGCCGGCCACTATCATCCTGCGCGCGTTAC AGTTCACTACACCTCAGATCCTCGATATCTTCTTCGAGAAAGTGGTGTTTGAAATCCGTGACAACAAGCTGCAGATGGAG CTGGTGCCTGAGCGCCTGCGCGGTGAAACCGCTACCTTCGATATCGAAGCAAACGGCACCGTCTACGTCGAAAAAGGTCG CCGCATTACTGCGCGCCATATTCGTCAGCTGGAAAAAGATGGCATTCAGCACATCGAAGTCCCGGTTGAATATATCGCAG GCAAAGTGGTCGCTAAAGATTACATCGATGAGAGCACCGGTGAGCTGATTGTTGCAGCGAACATGGAACTGTCACTGGAT CTGCTGGCTAAACTGAGCCAGTCCGGTCACAAGCGCATCGAAACGCTGTTCACCAACGATCTGGACCACGGTCCATATAT GTCCGAGACCCTGCGTGTCGACCCAACCAGCGATCGCCTGAGCGCACTGGTTGAGATCTATCGCATGATGCGTCCTGGTG AGCCGCCAACACGCGAAGCTGCAGAGAACCTGTTTGAGAACCTGTTCTTCTCAGAAGATCGTTACGATCTTTCTGCGGTC GGTCGTATGAAGTTCAACCGCTCATTGCTGCGTGATGAAATCGAAGGTTCAGGCATCCTGAGCAAAGATGACATCATCGA AGTGATGAAGAAACTGATCGACATCCGTAACGGTAAAGGCGAAGTGGACGATATCGACCACCTCGGTAACCGTCGTATTC GTTCAGTGGGTGAAATGGCTGAGAACCAGTTCCGTGTTGGTCTGGTCCGTGTTGAGCGTGCGGTTAAAGAGCGTCTGTCT CTGGGCGACCTTGATACGCTGATGCCACAGGACATGATCAACGCGAAGCCGATTTCGGCTGCGGTGAAAGAGTTCTTTGG TTCAAGCCAGCTTTCTCAGTTTATGGATCAGAACAACCCGCTGTCAGAGATTACGCACAAACGTCGTATCTCTGCTCTCG GCCCGGGTGGTTTGACGCGTGAGCGTGCCGGCTTCGAAGTGCGTGACGTACACCCAACGCACTACGGTCGTGTCTGCCCA ATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCCTTGTCTGTCTATGCACAGACCAATGAGTACGGTTTCCT TGAAACACCTTATCGCCGTGTTATCGACGGTCTGGTTTCTGACGAGATTCACTACCTCTCTGCTATCGAAGAGGGTAACT ACGTTATCGCTCAGGCGAACGCCCCTCTGGATGACAACGGCGCGTTTGTTGATGACCTGGTCACCTGCCGTAGCAAAGGC GAATCGAGTCTGTTCAGCCGCGATCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCTGTCGGTGCATCCCT GATCCCGTTCCTGGAACACGATGACGCCAACCGCGCCCTGATGGGTGCGAACATGCAACGTCAGGCCGTTCCGACTCTGC GTGCTGATAAGCCGCTGGTTGGTACCGGTATGGAACGTGCTGTTGCCGTTGACTCCGGTGTAACAGCCGTGGCGAAACGT GGCGGTACCGTACAGTACGTTGACGCATCACGTATCGTTATCAAAGTTAACGAAGACGAAATGCATGCTGGCGAAGCCGG TATCGACATTTACAACCTGACCAAATATACCCGTTCTAACCAGAACACCTGCATCAACCAGATGCCATGTGTTTCTCTGG GTGAGCCGGTTGAGCGCGGCGACGTGCTGGCAGATGGCCCGTCCACCGATCTGGGTGAACTGGCTCTGGGCCAGAACATG CGCGTGGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCCATCCTGGTCTCCGAGCGCGTGGTTCAGGAAGATCG CTTTACGACTATCCACATTCAGGAACTGGCTTGCGTGTCGCGTGACACCAAACTAGGGCCGGAAGAGATCACTGCTGATA TCCCGAACGTGGGTGAAGCTGCACTCTCTAAACTGGATGAGTCAGGCATCGTCTACATCGGTGCTGAAGTGACCGGTGGC GACATTCTGGTTGGTAAGGTAACGCCTAAAGGTGAAACCCAGCTGACGCCAGAAGAAAAACTGCTGCGCGCTATCTTCGG TGAAAAAGCCTCTGACGTGAAAGATTCGTCACTGCGCGTGCCGAATGGCGTGTCAGGTACTGTGATCGACGTTCAGGTCT TTACCCGCGATGGCGTGGAAAAAGACAAACGTGCGCTTGAAATCGAAGAGATGCAGCTGAAGCAGGCCAAAAAAGACCTG TCTGAAGAACTGCAGATCCTGGAAGCGGGCCTGTTCAGCCGTATCCAGAACGTACTGATTTCGGGTGGCGTTGAAGCAGA CAAACTGGACAAGCTGCCGCGCGAGCGCTGGCTGGAACTGGGTCTGACTGACGAAGCCAAGCAAAACCAGCTGGAGCAGC TGGCAGAGCAGTACGACGAACTGAAGCACGAGTTTGAGAAAAAACTCGAAGGTAAGCGTCGTAAGATCACCCAGGGCGAT GATCTGGCACCAGGCGTGCTGAAAATTGTTAAGGTTTATCTGGCTGTTAAGCGTCAGATTCAGCCGGGTGACAAAATGGC AGGCCGTCACGGTAACAAAGGTGTTATCTCCAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGCACGCCGG TTGACATCGTTCTGAACCCGCTGGGCGTACCATCGCGTATGAACATCGGTCAGATTCTGGAAACGCACCTGGGTATGGCA GCGAAAGGTATCGGCGAGAAAATCAACGCCATGCTGAAGAAGCAGGAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCG CGCCTATGACCTGGGTACCGATCTGCGTCAGCGTGTTGATCTGAACACCTTCTCTGATGACGAAGTACTGCGTCTGGCTG AGAACCTGAAGAAAGGTATGCCAATCGCCACGCCGGTGTTTGATGGCGCGAAAGAGAGCGAGATCAAAGAGCTGCTGCAG CTCGGCGGCCTGCCTTCTTCCGGTCAGATTACCCTGTTTGACGGCCGTACCGGTGAGCAGTTCGAACGTCAGGTAACCGT TGGCTACATGTACATGCTGAAACTTAACCACCTGGTTGATGACAAGATGCATGCACGTTCTACCGGTTCCTATAGCCTGG TTACTCAGCAGCCGCTGGGTGGTAAGGCGCAGTTCGGTGGTCAGCGCTTTGGTGAGATGGAAGTATGGGCACTGGAAGCA TATGGTGCCGCGTATACCCTGCAGGAAATGCTTACCGTTAAGTCTGATGACGTCAACGGCCGTACCAAGATGTATAAAAA CATCGTTGACGGTAACCATCAGATGGAACCGGGCATGCCGGAATCCTTCAACGTACTGTTGAAAGAGATTCGCTCGCTGG GTATCAACATCGAGCTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIASYSGNSELQYVSYRLGEPVF DVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQFTTPQILDIFFEKVVFEIRDNKLQME LVPERLRGETATFDIEANGTVYVEKGRRITARHIRQLEKDGIQHIEVPVEYIAGKVVAKDYIDESTGELIVAANMELSLD LLAKLSQSGHKRIETLFTNDLDHGPYMSETLRVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAV GRMKFNRSLLRDEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVIDGLVSDEIHYLSAIEEGNYVIAQANAPLDDNGAFVDDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGTVQYVDASRIVIKVNEDEMHAGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRIQNVLISGGVEADKLDKLPRERWLELGLTDEAKQNQLEQLAEQYDELKHEFEKKLEGKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGEKINAMLKKQEEVAKLREFIQRAYDLGTDLRQRVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 97 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 97 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 97 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 93 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 64 |
| rpoB | YP_003933039.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 49 |
