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Name : rpoBC (STAUR_5013) Accession : YP_003954618.1 Strain : Stigmatella aurantiaca DW4/3-1 Genome accession: NC_014623 Putative virulence/resistance : Unknown Product : bifunctional DNA-directed RNA polymerase subunit beta-beta' Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 6191621 - 6195847 bp Length : 4227 bp Strand : - Note : - DNA sequence : ATGCCGACGCAGATCCAGAACAACTTCCGCGTGCGGAAGACCTTCGCCAAGATCGCGAAGATCATCGACATTCCCAATCT CATCAACATCCAGAAGCAGTCCTACGAAAAGTTCCTCCAGGCGGACATTGCGCCGGAGAAGCGCGAGGACCTCGGCCTTC AGGGTGTCTTCAAGTCGGTGTTTCCGATCCGCGACTTCAACGAGACCTCCTCGCTGGAGTTCGTCAGCTACCACTTGGAG AAGCCCAAGTACGACGTTGATGAGTGCCACCAGCGTGGCATGACCTACTCGGCGCCCATCAAGGTCGTCGTCCGCCTGGT CGTATGGGACAAGGACGAGGAGACCGGCGCCCAGTCCATTCGCGATGTGAAGGAGCAGGAGGTCTATTTCGGCGAAATCC CGCTGATGACCCAGAACGGGACGTTCATCATCAACGGCACCGAGCGCGTGGTGGTCAGCCAGCTGCACCGCAGCCCGGGT GCCTTCTTCGACCACGACAAGGGCAAGAGCCACTCGTCTGGCAAGCTGCTCTACAACGCCCGCATCATCCCGTACCGTGG CTCGTGGATCGACTTCGAGTTCGACCACAAGGACCTGCTGTACGTGCGCATTGACCGGCGCCGCAAGCTGCCCGCCACGG TGCTCATCCGCGCCCTGGGCGCGGTTCAGGACACCGCGAAGAAGAACCCGCTGACCTTCTCGGGCTCCACCGAGGAGATC CTCAACTACTACTACGCCACCGAGACGATCTACCTCACGAGCAACGTCGACTTCGAGAAGTCGGTGGAGCTGGAGCTGTT GCCGGGTCAGCGCGCCACGCGCGACATCAAGACCAAGACGGGCGACCTGATCGTCAAGAAGAACCGCAAGTTCACCCGCG CCGCCATCAAGAAGCTCGAGGCGGCGAAGATGAAGACGCTGCCCATCGACGCGGACGAGCTCTTCACCAAGGTGTCCGCC TACGACGTGGTGGACGAGAACACCGGCGAGGTCATCCTCGAGTGCAACGAGGAGGTCAGCCAGGAGAAGGTGGACGAGCT CCTCAAGCGGGACATCAAGGAGTTCAAGGTTCTGTTCATCGACAACCTCAACGTGGGGCCGTACCTGCGTGAGACGTTGA TGATGGACAAGATCGAGACGCCCGAGCAGGCGATCATGGAGATCTACCGCCGCCTGCGCCCGGGTGATCCTCCGACGCCC GAGACGGCCACCAACCTCTTCAGCAACCTGTTCTTCAACCCCGAGCGCTACGATCTGTCCAAGGTCGGCCGCCTCAAGCT GAACTTCAAGTTCAGCCTCGAGGAGCCCCTCGACGGGCAGATCCTCACCAAGCGCGACATCCTCGAGGTCATCCGCTACC TGGTGGACCTCAAGAACGGCAAGGGGACGATCGACGACATCGATCACCTCGGCAACCGGCGCGTGCGCGCGGTGGGCGAG CTGCTGGAGAACCAGTACCGCATCGGTCTGGTGCGCATGGAGCGCGCGATCAAGGAGCGCATGAGCCTCCAGGAGATCGA AACGCTCATGCCGCACGACCTGATCAACGCCAAGCCGGTGACGGCGGTGATCAAGGAGTTCTTCGGGTCCAGCCAGCTGT CGCAGTTCATGGATCAGACGAACCCGCTCTCCGAGGTGACCCACAAGCGCCGCCTGTCCGCCCTCGGGCCTGGAGGCCTC ACCCGCGAGCGCGCGGGCTTCGAAGTGCGCGACGTGCACCCGACGCACTACGGCCGCATCTGCCCCATCGAGACGCCGGA AGGCCCGAACATCGGCCTCATCGCGTCGCTGTCCACCTACGCACGCGTCAACGAGTTCGGTTTCGTGGAGACGCCGTACC GCAAGGTGGAGGCCGGCTCGGTGACCGCCGACGTGGCTTTCTACTCGGCGCTCGAGGAGGAGAAGCACACCATCGGCCAG GCCAACGCCGAGACGGACAAGAAGGGCAAGTTCGTCAACGCGCTCGTGTCCTCCCGCCGTGGCGGTGAGTTCGTCCAGGC CAAGGCCGAGGACGTGGACCTGATGGACGTGTCCCCGAACCAGCTCGTGTCGGTGGCCGCCTCCCTCATTCCGTTCCTCG AGAACGACGACGCCAACCGCGCGCTCATGGGTTCCAACATGCAGCGCCAGGCGGTGCCGCTGCTGCGCACCGCGGCCCCG CTCGTGGGCACCGGCATCGAGGCCATCGTGGCCCGCGACTCCGGCGTGACGTGCGTGGCCCGCCGCGACGGCGTGGTGGA GTCCGTGGACGCCAGCCGCATCGTGGTCAAGGCGGACTCGCAGGCGGCCCTGAGCGACGTGTCCTCCGAGGTGGACATCT ACAACCTGCTCAAGTACCAGCGCTCCAACCAGAACACGTGCCTCAACCAGAAGCCCATCGTCCGCAAGGGCGACCGGGTG CGGAAGGGCGACGTGATCGCCGACGGTCCGGCGACGGAGACCGGTGAGCTGGCGCTCGGCCAGAACGTGGTGGTCGCGTT CATGCCGTGGCAGGGCTACAACTTCGAGGACTCCATCCTCATCAGCGAGCGCATCCTCCGGGATGACGTCTTCACGTCGA TTCACATCGAAGAGTTCGAGTGCATCGCGCGGGACACCAAGCTGGGCAAGGAGGAGATCACCCGCGACATTCCGAACGTG GGTGAAGAGGCCCTCAAGGACCTGGACGAGAGCGGCATCATCCGCATCGGCGCCGAGGTGAAGCCCGGCGACGTGCTGGT GGGCAAGATCACCCCGAAGGGCGAGACCCAGCTCTCCCCCGAGGAGAAGCTCCTGCGCGCCATCTTCGGTGAGAAGGCCG GCGATGTGCGTGACAGCTCCCTGCGCGTGCCCCCGGGCGTCCAGGGCACCGTCATCAACGCCAAGGTCTTCAGCCGCAAG GGCGTGGAGAAGGACGAGCGCGCCAAGCAGATCGAGTCGGCCGAGGAAGCCAAGCTCCTCAAGGACCAGAACGACGAGAT CAAGGTCCTCCAGGACAGCGCCTTCAGCCGTCTGCGCAACCTGCTGCGTGGCAAGGAGGCCCAGGGCAAGCTCGTGGATG ACAAGGGCAAGATCCTCCTGAAGAAGGGGGACATCCTCAACGACGAGCTGCTCGCCACCGTGCCCTACAAGTACTGGGCG GAGATCTCCGTTGGCGATCCGCTGGATGGCCGCATCCGCGACATCCTCAAGAGCCTTGAGGACACCAAGGAAGCGGTGAA GCTGGCATTCGGCGAGAAGATTGCCCGCATCAAGAAGGGCGACGAGTTGCCCCCGGGCGTCATCAAGATGGTGAAGGTGT ATGTCGCCATCAAGCGCAAGCTGGCCGTGGGCGACAAGATGGCCGGCCGTCACGGAAACAAGGGCGTCGTGTCCCGCATC CACCCGGAAGAGGACATGCCGTACCTGGACGACGGCCGTCCGGTGGACATCGTCCTCAACCCGCTGGGCGTGCCCAGCCG CATGAACATCGGGCAGATCCTCGAGACGCACCTGGGCTGGGCGGCCAAGGGCGTCGGCGAGCAGCTCCAGCGCTACATCG AGGAGAACTACTCCGGCGAGCAGCTCAAGAAGCAGCTGAAGACCGTCTATGACGACAAGGCCTTCGGCGACTTCGTGGAC GCGCTGCCCGACGACGAGGTGAAGATCCTCTGCCAGCGTCTGAAGAAGGGCATCCACGTCGCCACGCCGGTGTTCGACGG CGCGCGCGAGCCGGAGATCCACTCGCTCTTCGACGAGGCGCGTCTGCCCCGCACGGGCCAGATGGTGCTCTTCGACGGCC GTACCGGTGAGCCGTTCGACCAGAACGTCACCGTGGGCGTCATGTACATGCTGAAGCTGCACCACCTCGTGGACGAGAAG ATCCACGCGCGCTCCATCGGGCCTTACTCCCTCGTCACGCAGCAGCCCCTGGGCGGCAAGGCCCAGTTCGGCGGCCAGCG TCTGGGAGAGATGGAAGTGTGGGCCATGGAGGCCTACGGCGCCGCGTACACGCTGCAGGAGTTCCTCACCGTCAAGTCGG ACGACGTGGTGGGCCGCACGCGCATGTACGAGGCCATCGTCAAGGGCGACAACGTGCTGGAGTCGGGTCTCCCCGAGTCC TTCAACGTGCTCCTCAAGGAGCTCCAGTCGCTCGCCTTGGACGTGGAACTGCTGGAGAGCGCGCCGCCTGAGCGTCAGCG CTCGTTCGGCGGAGACTTCGGCGGAGGGGGCGACAGCGATGACCGCAAGACCGGGACCGATGCGTAG Protein sequence : MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAPEKREDLGLQGVFKSVFPIRDFNETSSLEFVSYHLE KPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPG AFFDHDKGKSHSSGKLLYNARIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVQDTAKKNPLTFSGSTEEI LNYYYATETIYLTSNVDFEKSVELELLPGQRATRDIKTKTGDLIVKKNRKFTRAAIKKLEAAKMKTLPIDADELFTKVSA YDVVDENTGEVILECNEEVSQEKVDELLKRDIKEFKVLFIDNLNVGPYLRETLMMDKIETPEQAIMEIYRRLRPGDPPTP ETATNLFSNLFFNPERYDLSKVGRLKLNFKFSLEEPLDGQILTKRDILEVIRYLVDLKNGKGTIDDIDHLGNRRVRAVGE LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGL TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTYARVNEFGFVETPYRKVEAGSVTADVAFYSALEEEKHTIGQ ANAETDKKGKFVNALVSSRRGGEFVQAKAEDVDLMDVSPNQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP LVGTGIEAIVARDSGVTCVARRDGVVESVDASRIVVKADSQAALSDVSSEVDIYNLLKYQRSNQNTCLNQKPIVRKGDRV RKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSILISERILRDDVFTSIHIEEFECIARDTKLGKEEITRDIPNV GEEALKDLDESGIIRIGAEVKPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVQGTVINAKVFSRK GVEKDERAKQIESAEEAKLLKDQNDEIKVLQDSAFSRLRNLLRGKEAQGKLVDDKGKILLKKGDILNDELLATVPYKYWA EISVGDPLDGRIRDILKSLEDTKEAVKLAFGEKIARIKKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRI HPEEDMPYLDDGRPVDIVLNPLGVPSRMNIGQILETHLGWAAKGVGEQLQRYIEENYSGEQLKKQLKTVYDDKAFGDFVD ALPDDEVKILCQRLKKGIHVATPVFDGAREPEIHSLFDEARLPRTGQMVLFDGRTGEPFDQNVTVGVMYMLKLHHLVDEK IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPES FNVLLKELQSLALDVELLESAPPERQRSFGGDFGGGGDSDDRKTGTDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 58 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_002516.2.881699.p | Protein | 0.0 | 59 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_009085.4918494.p0 | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_010611.6233925.p0 | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_011595.7060572.p0 | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_010410.6003841.p0 | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_011586.7046027.p0 | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_010400.5987325.p0 | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | CP000675.2.gene392.p | Protein | 0.0 | 58 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | CP004022.1.gene2794. | Protein | 0.0 | 57 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | CP001138.1.gene4362. | Protein | 0.0 | 57 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | CP000647.1.gene4402. | Protein | 0.0 | 57 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_008702.1.4609796. | Protein | 0.0 | 57 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | CP002695.1.gene18.p0 | Protein | 0.0 | 56 |
| rpoBC | YP_003954618.1 | bifunctional DNA-directed RNA polymerase subunit beta-beta' | NC_011035.1.6448762. | Protein | 0.0 | 56 |
