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Name : Lbys_2620 (Lbys_2620) Accession : YP_003998635.1 Strain : Leadbetterella byssophila DSM 17132 Genome accession: NC_014655 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 2925318 - 2929175 bp Length : 3858 bp Strand : + Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR007121:IPR010243:IPR007644:IPR007642:IPR 007645:IPR019462:IPR007120:IPR007641; KEGG: sli:Slin_4477 DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domai DNA sequence : TTGAAATTGACAGAAACCGGAAGGAAGTCCTTTGCAAGTGTTCAGCCCGCGTTAGAATATCCTGATTTTCTGGATATCCA ATTGCAATCATTCACAGAGTTTTTCCAGATTGATACACCTGCTGAAAGCCGCAGAGCGGAAGGCTTGTATCAAACTTTCA TGGATAACTTCCCGATTGCAGACTCGCGCGAGAACTATGTGCTAGAGTTTGTGGATTACACCATTGACCAGCCAAAATAC TCTGTAGATGAGTGTATCGATAGAGGTTTGACGTATTCTGTACCATTGAAGGCCAAATTAAAATTGACCTGTAATGACGC AGACAACGAGGATTTTGAGACCATTGAGCAGGAGGTTTTCTTAGGAAACATCCCTTACATGACCTCAAGAGGTTCTTTTG TGATTAACGGAGCAGAGCGTGTTATCGTTTCTCAGCTTCACCGTTCTCCGGGTGTGTTCTTCTCTATGAGTAAGCATACA AACGGAACGAAGTTGTATTCTGCACGTGTGATCCCAATGAAAGGATCTTGGATCGAATTCTCTACTGACGTGAATAACGT CATGTATGCGTACATTGATCGTAAGAAGAAGTTTCCAGTGACTACACTACTTCGTTCTATTGGATTTGGAACGGATAAAG AAATCTTGGATCTCTTCGGACTATCTGAAGAAATCGCGGCTACTCGTGATAACTTGAAGCAGGTTGTGGGTAGAAGATTA GCAGCAAGGGTGTTGAAAACTTGGACAGAAGACTTCGTGGATGAGGATACTGGTGAAGTAGTATCTATTGATCGTAACGA GGTTATCTTGGAGAGGGATTCCGTTATCACTGAGGACGATGTAGAATTGATCCTTAGCACAGAATTAAAGTCGGTTATCC TTCACAGAGAAGATGCCAACGTTTCTGAGTATAACATTATCTACAATACATTACAAAAAGATAGCTCTAACTCGGAGAAG GAAGCGGTGGAACAAATCTATCGTCAACTTCGTAACACTGAAGCTCCGGATGAAGCTACAGCGAGAGAGATTATCCAAGG TCTGTTCTTCTCTGACAAGCGTTATGACTTAGGAGAAGTAGGACGTTACAGAGTAAATACCAAATTGAATTTGGATACTC CACTAGAGACTAGAGTTCTTTCTAAAGAGGATATCATCTCTATCGTGAAGTATTTGATCGGTTTGATAAACTCTAAAGCA GTAGTGGATGATATTGACCACTTATCTAACCGTCGTGTACGTACCGTAGGAGAGCAGTTGTCCGGACAGTTTGGTGTAGG TCTAGCCCGTATGGCCAGAACCATCAAAGAAAGAATGAACGTTAGAGATAACGAAGATTTCAAACCGGTAGATTTGATTA ATGCAAGAACCTTGTCTTCTGTAATCAACTCGTTCTTTGGTACTAACCAGTTGTCTCAGTTCATGGATCAAACGAACCCA TTGGCGGAGATCACTCACAAACGTCGTCTATCCGCTTTAGGACCTGGTGGTCTATCCAGAGAAAGAGCAGGTTTCGAGGT TCGTGACGTTCACTATACGCACTATGGTCGTCTTTGTACTATTGAAACTCCTGAAGGTCCAAACATTGGATTGATTTCTT CGCTTTGTACTTATGCGAAAATCAACTCTATGGGCTTCATCGAGACTCCATATAACAAGATTGAAGACGGTAAGTTGACC GGAAAAATCGAATACCTAACGGCTGAAGAGGAAGATGGTAAGAACATTGCCATGGCTACTGCAGATGTAAATCCTGATGG AAGCTTTACAGTAGATACTTTGAAATGTCGTTACGAAGGTGACTTCCCAATGAAGTCTCCAGACGAGATCGAGTATATGG ACATCGCTCCTAACCAGATCGTATCTATTGCGGCATCTATGATTCCTTTCTTGGAGCATGATGATGCTAACCGTGCTTTG ATGGGATCGAACATGCAGCGTCAAGCAGTGCCTTTACTTCGTCCTGAAGCTCCAATAGTAGGTACTGGTTTGGAAGGTAA ATTAGCTCGTGACTCCAGAACGCTAGTTGTAGCAGAAGGAGACGGGGTGATTGACTATGTAGATGCTGAGAAGATCGTAG TGAACTATGACTGGACAGATAACCAGAAATTAGTAAGCTTCGATACGAACTTCACTACTTATAAATTAATCAAGTTCCGT AGAACTAACCAGGATACATGTATTAACCTTCGTCCTATTGTATTAAAAGGACAAAGAGTTAAGAAAGGACAAATCCTTGT AGAAGGTTATGCTACTCAGGGTGGTGAACTTGCTCTAGGACGTAACCTTCAGGTAGCGTTCATGCCTTGGCAAGGTTATA ACTTTGAGGATGCCATCGTAATCTCTGAACGTGTGGTTCGTGAAGATATCTTTACTTCCATCCACATTGAGGAATTTGAC CTTGAAGTACGTGATACGAAGAGGGGAGAGGAAGAATTAACTTCTGAAATTCCAAACGTATCTGAAGAAGCAGTTAAGAA CCTGGACGAAAACGGTATAGTACGTGTAGGTACTCACATCAAAGAAGGTGATATCCTTATCGGTAAGATTACTCCTAAAG GAGAGTCTGATCCAACTCCGGAAGAGAAGCTATTGAGAGCTATCTTCGGTGATAAAGCCGGTGATGTGAAAGATGCTTCT AAGAAAGCACCTCCATCTCTAAGAGGGGTGATCATTGATACCAAACTCTTCTCTAGACCTTCTAAAGAAGAACGTTTGAA ACACAAGGAGGAAGTTAAACGTCTGATGGTAAAACACAGCAAAGACCTTTCTGCCTTGAAAGAAGTAATGATTGATAAAA TGGTAACTCTATTAGACGGTAAAACTTCTAATGGTGTGAAACATAAATTCGGAGAAGAACTAATCTCTAAAGGAGTTAAG TTTAACCGTTCGAACATTACGAATAACCTATTCCCAGAGAAAAACCCATTTGTGGATGAAAGCACTTATAACGTGCCTGA AGAAGCAAACTTATTGGGTGATATTATCTTGGAAGGCTGGACTAATGATGCTGAAACGAACAGCCTTTTGGTACAATTAG TGAAAAACTATTTGACTAGAAGATCTGAAATCATCGGTGTGTTCAAGAGAGAGAAATTTGTTCTTGAAGTAGGTGATGAA CTTCCAGCGGGTATCGTTAAGCTAGCTAAGGTTTACATCGCTAAGAAACGTAAACTGAAAGTAGGGGATAAGATGGCCGG TCGTCACGGTAACAAAGGGGTTGTGGCTCGTATCGTAAGAGACGAGGATATGCCATTCCTTGAAGACGGAACTACCATGG ACATCGTACTAAACCCACTAGGTGTACCTTCCCGTATGAACATCGGACAGCTGTACGAGGTTTGTTTAGGATGGGCCGGA AAGAAGCTAGGTCGTAAATATGCTACTCCAATCTTTGATGGTGCTTCTAGCGAAGAAGTGGCAGCTGAGTTGAAAGAAGC AGGTCTACAAGAATTCGGTCGTACATACCTATATAACGGTTTAACGGGTGAGCGCTTTGACCAGCCTACAACAGTGGGTA TCATGTATATGTTGAAGCTAGGTCACTTGGTAGACGATAAAATGCACGCTCGTTCTATCGGACCATACTCTCTTATTACT CAACAACCTCTGGGTGGTAAAGCTCAGTTTGGTGGTCAGCGTTTTGGAGAGATGGAGGTATGGGCTCTGGAAGCCTTCGG TGCGTCACATGTATTAAGGGAGATCCTTACGCTGAAATCCGATGACGTACTCGGAAGAGCGAAAGCATACGAAGCCATAG TTAAAGGTGAAAACTTACCTAAAGCTAGCATTCCGGAATCGTTTAACGTATTGGTGCACGAACTAAGAGGACTTGCACTA GAGATCACTCTTAATTAA Protein sequence : MKLTETGRKSFASVQPALEYPDFLDIQLQSFTEFFQIDTPAESRRAEGLYQTFMDNFPIADSRENYVLEFVDYTIDQPKY SVDECIDRGLTYSVPLKAKLKLTCNDADNEDFETIEQEVFLGNIPYMTSRGSFVINGAERVIVSQLHRSPGVFFSMSKHT NGTKLYSARVIPMKGSWIEFSTDVNNVMYAYIDRKKKFPVTTLLRSIGFGTDKEILDLFGLSEEIAATRDNLKQVVGRRL AARVLKTWTEDFVDEDTGEVVSIDRNEVILERDSVITEDDVELILSTELKSVILHREDANVSEYNIIYNTLQKDSSNSEK EAVEQIYRQLRNTEAPDEATAREIIQGLFFSDKRYDLGEVGRYRVNTKLNLDTPLETRVLSKEDIISIVKYLIGLINSKA VVDDIDHLSNRRVRTVGEQLSGQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNP LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCTYAKINSMGFIETPYNKIEDGKLT GKIEYLTAEEEDGKNIAMATADVNPDGSFTVDTLKCRYEGDFPMKSPDEIEYMDIAPNQIVSIAASMIPFLEHDDANRAL MGSNMQRQAVPLLRPEAPIVGTGLEGKLARDSRTLVVAEGDGVIDYVDAEKIVVNYDWTDNQKLVSFDTNFTTYKLIKFR RTNQDTCINLRPIVLKGQRVKKGQILVEGYATQGGELALGRNLQVAFMPWQGYNFEDAIVISERVVREDIFTSIHIEEFD LEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIVRVGTHIKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDAS KKAPPSLRGVIIDTKLFSRPSKEERLKHKEEVKRLMVKHSKDLSALKEVMIDKMVTLLDGKTSNGVKHKFGEELISKGVK FNRSNITNNLFPEKNPFVDESTYNVPEEANLLGDIILEGWTNDAETNSLLVQLVKNYLTRRSEIIGVFKREKFVLEVGDE LPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDGTTMDIVLNPLGVPSRMNIGQLYEVCLGWAG KKLGRKYATPIFDGASSEEVAAELKEAGLQEFGRTYLYNGLTGERFDQPTTVGIMYMLKLGHLVDDKMHARSIGPYSLIT QQPLGGKAQFGGQRFGEMEVWALEAFGASHVLREILTLKSDDVLGRAKAYEAIVKGENLPKASIPESFNVLVHELRGLAL EITLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 45 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 43 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 43 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 43 |
| Lbys_2620 | YP_003998635.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 42 |
