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Name : Palpr_1725 (Palpr_1725) Accession : YP_004042849.1 Strain : Paludibacter propionicigenes WB4 Genome accession: NC_014734 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2061591 - 2065403 bp Length : 3813 bp Strand : + Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR010243: IPR007121: IPR007644: IPR007642: IPR 007645: IPR019462: IPR007120: IPR007641; KEGG: bvu:BVU_0813 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 DNA sequence : ATGTCGTCATTAACTAAAGCTCAAAGAATAAATTTTGCTTCTATCAAAAATCAGTTGGAATATCCTGACTTTTTGGAAGT ACAATTAAAATCTTTCCAGGACTTTTTTCAAATGGACACCGCTCCTGAAAAAAGAAAATCAGAAGGTTTGTATAAAGTTT TTTCCGAAAACTTTCCAATTGCTGATACCCGAAATAATTTCATCCTCGAATTTCTCGATTACTACGTTGACCCTCCACGT TATTCGATAGATGAGTGTGTAGAACGCGGCTTAACTTATAGCGTGCCGCTTAAAGCCAAACTAAAACTATATTGCACCGA TCCGGATCATGAAGATTTTGATACGGTGATTCAAGATGTCTATCTGGGACCAATCCCATATATGACAGCTAAAGGAACCT TCGTTATCAATGGCGCCGAACGTGTTATTGTATCGCAGCTTCACCGTTCACCCGGTGTATTCTTCGGACAAAGTACACAT GCCAACGGAACGAAACTTTATTCCGCTCGTATCATTCCTTTCCGCGGATCTTGGATTGAATTTGCTACCGACATCAACAA CGTGATGTACGCTTATATCGATCGTAAGAAAAAATTGCCTGTTACAACATTACTTCGTGCCATTGGTTTCGAAAGTGATA AAGATATATTAGAAATTTTCAACCTTGCTGAAGAAATTAAGGTTAGCAAGACCAGTTTGAAAAAAGCTATCGGCCAAAAA TTAGCTGCCCGTGTATTGAAAACCTGGGTGGAAGATTTTGTGGACGAAGATACCGGTGAAGTAGTAACCATTGAGCGTAA CGAAGTAATTATCGACCGTGAAACTATTTTAGAAAATAGTCACATCGACGAAATTATTGAAGCAGGTACGCCTACTATCT TACTACATAAGGCAGATGCAAATCAAAATGACTATGCCATTATTTACAATACTCTTCAGAAAGACCCTAGTAATTCTGAA AAAGAGGCTGTATTGTATATTTACCGTCAATTACGTAACGCTGTCCCAGCAGATGATTCGACAGCTCGTGAGGTTATCAA TAACTTATTCTTCCCTGAAAAACGTTACGATTTAGGTAATGTAGGTCGTTTCCGTATAAACCGGAAATTGAACCTTACTA CCAGCATGGATACAAAAGTACTGACCAAAGAAGATATTATTGAAATCATCAAATACCTGATTGAGTTAATAAACTCAAAA GCGGATGTTGATGATATTGACCACTTGAGCAACCGTCGTGTTCGTACAGTTGGTGAACAATTATATAATCAATTCGGTGT AGGACTTTCGCGTATGGCTCGTACCATTCGTGAGCGAATGAATGTTCGTGATAACGAAGTCTTCACTCCTATTGACCTGA TTAATGCCAAAAGTATTTCGTCAGTAATCAATTCGTTCTTCGGAACCAATGCTCTTTCTCAATTCATGGATCAACAGAAT CCATTGGCTGAGATTACGCACAAACGCCGTATGTCTGCCCTCGGGCCTGGTGGTTTGTCACGTGAGCGTGCAGGTTTTGA GGTTCGTGACGTACACTATACTCACTACGGACGTTTATGTCCGATTGAAACTCCTGAAGGTCCAAACATTGGTTTGATTT CTTCGCTTTGTATCTATGCTAAAATCAATGAACTTGGTTTTATAGAAACTCCTTACCGTAAAGTTACGGACTCTGTAGTT GATATTTCAGAAGCCGGTATTGAATACTTTACTGCTGAAGAAGAAGAAAATCTGATTATTGCTCAAGGAAATGCTCCTTT GAACGATGATGGTGGTTTCATTCGGACAAAAGTAAAATCGCGTCTTGGCGCCGATTTCCCAGTAGTAGCACCCGATGAGG TGAACTTAATGGATGTTTCTCCATCACAGATTGCTTCGATTGCGGCAGCATTGATTCCCTTCCTGGAACATGATGATGCT AACCGTGCGTTGATGGGATCTAACATGATGCGCCAGGCAGTGCCATTATTGCGCTGCGAAGCTCCTATTGTGGGTACAGG TATCGAAGCTCAGTTGATTCGCGATTCTCGTACACAAGTAGCAGCTGAAGGTGAAGGAGAAGTTGAATTTGTTGATGCAA CTTGTATTAAAATACGCTACGACAGAACAGAAGACGAAGAATTTGTAAGCTTCGAATCTGCCGTAAAAGAATATAAATTA CCTAAGTTCCAAAAAACCAATCAAAACACGACTATCGACTTACGTCCTATCGTGAAAAAAGGCGAACGTGTTACTAATGG TCAGATTATGACTGAAGGTTACGCTACGCAAAATGGTGAATTGGCTATTGGTAAGAACCTGAAAGTAGCTTTCATGCCTT GGAAAGGTTATAACTTTGAGGATGCTATTGTAATCAATGAACGTGTGGTACGTGAAGATATTTTCACATCTATCCATGTT GTTGAACAATTGCTAGACGTTCGTGAAACCAAACGTGGTATTGAAGAATTTACTTCGGATATACCTAACGTAAGCGAAGA AGCAACAAAAGATTTGGATGAAAATGGTATTATCCGCATCGGTGCCCGCATCGAACCGGGAGATATCATTATCGGTAAGA TTACTCCAAAAGGAGAATCAGATCCTTCACCGGAAGAAAAACTGCTTCGTGCTATCTTCGGAGATAAAGCCGGGGATGTG AAAGATGCTTCACTGAAAGCAACTCCATCATTATCGGGTGTTGTTATCGGTAAACGTCTATTCTCAAAAGCGCAAAAGAA CAGAAAATCGAAACTTGCAGATAAAGCTGTACTTCCAAAACTGGATGAGGAATTTGAAAATCAGGCAGCTATTTTGCGCG ATACATTAGTTGAAAAACTAATCGTATTACTTGGTGATAAAACTTCGGCCGGTGTTAAAGATTTCTTAGGTGCTGATGTA ATATCTCGTAACAGCAAGTTTACAATCGAAAGATTGCGTGAAATCGACTATACTGCGGTTCAACTAAGCAAGTGGACTAC TGATTCTCACAAAAATGAATTAGTAAAACAATTGATAATGAATTATCTGAGAAAATACAAGGAATTGGATGCTCAGATAA AACGTCAGAAATTCAATATTACTATCGGTGATGAATTGCCAAACGGTATTGTACAGATAGCTAAAGTCTATATTGCTAAA AAACGTAAGATTCGTGTTGGAGATAAAATGGCAGGTCGTCACGGGAATAAAGGTATCGTGTCACGTATCGTTCGTCAGGA GGATATGCCATTCCTTGAAGATGGAACTCCGGTAGATATAGTATTGAACCCACTGGGTGTGCCTTCGCGTATGAACCTTG GACAGATTTTTGAAACCGTTTTAGGATGGGCAGGAAAAGAATTAGGTTTGCGTTTTGCAACTCCTATCTTCGACGGAGCC AGCTTAGATGATTTGAACGCATGGACAGACAAAGCCGGTGTTCCAAATTACGGAAAAACATATTTGTACGATGGTGGAAC CGGCGAACGTTTTGACCAGACTGCCACAGTAGGTGTTATTTATATGTTGAAACTGGGTCACATGGTTGAAGATAAAATGC ACGCGCGTTCTATCGGACCATACTCACTCATTACTCAACAGCCTCTTGGTGGTAAAGCTCAATTCGGGGGTCAACGTTTC GGAGAAATGGAAGTTTGGGCACTTGAAGCATTCGGTGCTGCTCACATTCTTCAAGAAATTCTGACTGTAAAATCGGATGA CGTTATGGGACGTGCTCGTACTTACGAAGCAATTGTAAAAGGCGATCCTATGCCAACACCCGGAATTCCGGAATCGCTCA ACGTATTGTTGCACGAACTCCGCGGATTGGGTCTGAGCATCAGTTTAGATTAA Protein sequence : MSSLTKAQRINFASIKNQLEYPDFLEVQLKSFQDFFQMDTAPEKRKSEGLYKVFSENFPIADTRNNFILEFLDYYVDPPR YSIDECVERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDVYLGPIPYMTAKGTFVINGAERVIVSQLHRSPGVFFGQSTH ANGTKLYSARIIPFRGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFESDKDILEIFNLAEEIKVSKTSLKKAIGQK LAARVLKTWVEDFVDEDTGEVVTIERNEVIIDRETILENSHIDEIIEAGTPTILLHKADANQNDYAIIYNTLQKDPSNSE KEAVLYIYRQLRNAVPADDSTAREVINNLFFPEKRYDLGNVGRFRINRKLNLTTSMDTKVLTKEDIIEIIKYLIELINSK ADVDDIDHLSNRRVRTVGEQLYNQFGVGLSRMARTIRERMNVRDNEVFTPIDLINAKSISSVINSFFGTNALSQFMDQQN PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCIYAKINELGFIETPYRKVTDSVV DISEAGIEYFTAEEEENLIIAQGNAPLNDDGGFIRTKVKSRLGADFPVVAPDEVNLMDVSPSQIASIAAALIPFLEHDDA NRALMGSNMMRQAVPLLRCEAPIVGTGIEAQLIRDSRTQVAAEGEGEVEFVDATCIKIRYDRTEDEEFVSFESAVKEYKL PKFQKTNQNTTIDLRPIVKKGERVTNGQIMTEGYATQNGELAIGKNLKVAFMPWKGYNFEDAIVINERVVREDIFTSIHV VEQLLDVRETKRGIEEFTSDIPNVSEEATKDLDENGIIRIGARIEPGDIIIGKITPKGESDPSPEEKLLRAIFGDKAGDV KDASLKATPSLSGVVIGKRLFSKAQKNRKSKLADKAVLPKLDEEFENQAAILRDTLVEKLIVLLGDKTSAGVKDFLGADV ISRNSKFTIERLREIDYTAVQLSKWTTDSHKNELVKQLIMNYLRKYKELDAQIKRQKFNITIGDELPNGIVQIAKVYIAK KRKIRVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIFETVLGWAGKELGLRFATPIFDGA SLDDLNAWTDKAGVPNYGKTYLYDGGTGERFDQTATVGVIYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF GEMEVWALEAFGAAHILQEILTVKSDDVMGRARTYEAIVKGDPMPTPGIPESLNVLLHELRGLGLSISLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 45 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 44 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 44 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 43 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 42 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 42 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 42 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 42 |
| Palpr_1725 | YP_004042849.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 42 |
