Gene Information

Name : Palpr_0085 (Palpr_0085)
Accession : YP_004041232.1
Strain : Paludibacter propionicigenes WB4
Genome accession: NC_014734
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 91316 - 91990 bp
Length : 675 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: bfs:BF0511 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-bi

DNA sequence : 
ATGATTACACTTAAAAACATCAACAAAACGTACGACATGGGTCAGGCTTCGTTGCACGTTCTCAAAGGGATTGATTTACA
TATTTCGGAAGGAGAATATGTGTCGATAATGGGGGCATCCGGTTCAGGGAAGTCAACGTTGCTAAATATTCTGGGTATAT
TAGATAATTATGATAAGGGTGAATACTATTTAAATAATAAACTGATTAAAGATTTATCGGAAAAGCAGGCTGCTGTTTAT
CGTAACGAGATGATTGGTTTTGTTTTTCAATCGTTCAACCTGATAAATTTCAAGAATGCGCTGGAAAATGTAGCTCTGCC
ATTATATTACAAGAATATTAGTCGTAAAAAGCGTAATATTATTGCTATGGAATACCTGGACAGAATGGGGTTAAGAGATT
GGGCACATCATATGCCTAACGAAATGTCCGGTGGTCAGAAACAACGTGTAGCCATAGCCAGAGCCATTATTTCCAAACCC
CAAATACTGCTGGCTGATGAGCCGACCGGCGCATTGGACAGTGTAACTACAGTAGAAATGATGAAAGTGCTGGGTGATTT
GAATGCTAATGGACTTACGACTATAATTGTAACGCACGAAAGATCGGTAGCCGATGAAACCAAATCGATAATACACATTA
AAGATGGTTTGATCGAAAATATTGAGAGAAAATAA

Protein sequence : 
MITLKNINKTYDMGQASLHVLKGIDLHISEGEYVSIMGASGSGKSTLLNILGILDNYDKGEYYLNNKLIKDLSEKQAAVY
RNEMIGFVFQSFNLINFKNALENVALPLYYKNISRKKRNIIAMEYLDRMGLRDWAHHMPNEMSGGQKQRVAIARAIISKP
QILLADEPTGALDSVTTVEMMKVLGDLNANGLTTIIVTHERSVADETKSIIHIKDGLIENIERK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Palpr_0085 YP_004041232.1 ABC transporter NC_012469.1.7686878. Protein 3e-55 55
Palpr_0085 YP_004041232.1 ABC transporter NC_008702.1.4606598. Protein 6e-40 46
Palpr_0085 YP_004041232.1 ABC transporter NC_012469.1.7686946. Protein 3e-27 41