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Name : Calni_1528 (Calni_1528) Accession : YP_004051599.1 Strain : Calditerrivibrio nitroreducens DSM 19672 Genome accession: NC_014758 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1577957 - 1581907 bp Length : 3951 bp Strand : - Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterPro IPR007121: IPR007644: IPR007642: IPR007645: IPR 019462: IPR007120: IPR007641: IPR010243; KEGG: ddf:DEFDS_1779 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rp DNA sequence : ATGAATAAATCTACCAATTCCATCCAAAGAGTAAGTTTTTCAAAGATTAAAAAAGTTTTAGAAATGCCTGACCTTGTTGA GGTTCAAAAGAAATCTTATTTAGATTTTCTTCAATTGGATGTACCTGCTGATAAGAGAGAAAATAAAGGTCTTGAGCAGG TATTCAGGGAGATTTTCCCTATTACAGATTTCAATGAAACTGCGATTCTCGAGTATATAAGCTATACAATCGAGAAACCA AAATATGACGCAAAAGAATCTATCATTAGAAAAACATCCTATGCTGCACCTTTAAAGGTAAAGGTGAGGCTTGTTTGTTA TGAAAACAGCGAAGATGGTTCTGAAAAAGTAGTTGCATCTGCCAAAGAATCTGATGTGTATCTTTGTGATATCCCACTGA TGACAGATAGAGCTACTTTTATAATAAATGGAGTAGAAAGGGTAATTGTTAGCCAGTTGCATAGATCTCCTGGAATATTT TTTGAAGATTTAACTGCTGGAAAGAGTGTTGTTGAAAAACACTTGTTTGGTTCGAGAATTATACCATACAGAGGTTCATG GATAGATTTTGAATTTGATACAAAGAATTTTATTTATGTAAGAATTGATAAAAAAAGAAAAATTCTTGCGACTGTTCTTC TTAAGGCCCTGGGACTTTCTGAGCAGGATATATTAAACACATATTACAAGACAGAAGTTGTTAGGTTTAAAGGGCTGAAT TTTGAGAGATATTTTGAACCTGAGAATCTTATAGGTAGAAGGAATAGCCTTGATATCAAGGATGAACAAACTGGTGAAGT AATTTATAAAGCTGGGCATAAGATATCAAAGGGGATTATTAGAAAACTTACCAAAGCTGGTATCAAAAAGATGAATTGCC AGTATGAAGATATTTCAGAGACTTTCTTTGCAGAAGACATTGTTACAAAAGATGGGGAGCTACTGGTAAAAGCAAATACA AAAATTTCTGCAGAGATACTTGAAAAACTTAGAGAGAATGATATCGAAGAGTTTAAAGTGCTCCTTATCGATAGTAAGGG TAGCGACACCGCCATCAGGGATATGCTGGAAGCTGATAAAATAGAAAGTACAGAGGAAGCCCTGCTTGAGATTTACAAAA AGATGAGACCCGGAGAGCCGGCGACTGTTGAGACTGCTAAAACATACTTTGACAACTTATTTTTCAACGATAAAAAGTAT GACCTTTCCAGGGTTGGTAGATTAAAAATCAATAAAAGACTAAAGCTTGACAAACCGCTTGAACTTACAACGCTCACTAA AGAAGATATTGTTGAAACAATAAGAGTTTTAAACAATATAAGGCTTGGTGAAGATGATGTGGATGATATAGATCATCTTG GCCATAGAAGGGTTAAGGCAGTTGGTGAGCAGCTCCAAAACCATATCCGTATAGGAATGGTTAGGATGGAGAAAACAGTT AAAGAGAGGATGAGTATTCAGGATACAAAGGATCTTGGCCCACAGGATCTGCTGAATGCTAAGCCTTTATCTTCATCGAT AAAAGAGTTTTTTGGTAGCTATCAGCTTTCACAGTTTATGGATCAAACAAATCCACTAAGCGAAATTACCCATAAAAGAA GGCTGTCTGCATTGGGACCTGGTGGTCTAAACAGGGATAGAGCAGGGTTTGAAGTGCGTGACGTACATACATCACACTAC GGAAGGCTTTGCCCTATTGAAACACCTGAGGGGCCTAACATTGGTCTTATTACTTCCCTGACTACATACGCAAGAGTGAA TGATTATGGATTTATCGAAACACCATATAGAAAAGTGGAAAATGGCAGAGTTACCGACGAAGTTGTATACATGTCTGCAA TTGAAGAAGAGGATTACTTTATAGCCCAGGCTAATGCTAAGCTTGACAGCGAAGGTAACTTTTTAAATGAATACGTTATC GCAAGGAAGAAGGGGGAAATTGTTACTGTTCATAAAGATGAGATACAGTTTATGGACGTTGCCCCAAACCAGATAATTTC AGTATCGACCGCATTAATACCTTTCCTTGAACACGATGATGCAAACAGGGCTTTGATGGGTTCAAACATGCAAAGACAGG GTGTTCCTCTGATAAGAACTGATGCACCTATTGTGGGTACAGGTCTTGAAAGGAAGGTGGCAATAGATTCTGGAGCTGTT CTTGTGGCGAAAAGATCTGGGGTTGTTCAATACGTGGATGCTAAAACAATTATTATCGGTTATACCGATGGAGATGACTT TGGTATCGATGTATACGAACTTGATAAATATAGAAGAACAAACCAGGATACCTGTATCAATTATGTCCCTCTCGTTCAGA AAGGTCAGAAGGTTGAAAAGGGTGATATTATTGCAGACGGACCTGCCACAGATAGAGGTGATCTTGCCCTAGGAAGGAAT GTGGTGGTGGCATTTATGCCATGGATGGGCTACAACTATGAGGACTCTATACTTGTTTCGCAGAAACTCGTTAAAGAGGA TGCATATACATCGATACATATAGAAGAGTTTGAAATAGAGGCAAGGGATACCAAGCTTGGGCCAGAAGAGATAACAAGGG ATATCCCAAACGTTAGTGAAGAGGCTTTAAAGGATCTGGATGAAAGTGGAATAATTCGTATAGGTGCAAAAGTAAAAGAG GGTGATATACTCGTAGGGAAAGTTACACCTAAGGGGGAATCTCAGACTACACCTGAAGAAAAGCTATTAAGAGCAATATT TGGTGAGAAGGCTGGAGATGTTAAAGATGCATCCCTTAGAGTACCTTCAGGTATCTCCGGTGTTGTTATAGATGTTGTCG TTATGACCAGAAGGGGTGTGGAAAAAGATGATAGAACTGTTAAGATTGAAAAGGCTGAGCTTCAGGAGATACAAAGAAAT TATAAAATAGAGATGCTTACTCTTGATGAAACGAGAAAATCTGCCATAGCAAAGATCTTAGAAAATAGAAAGCTCTCAAA AGCAGTTACGCTAAAAGGTGAATCTTTCAAAAAGGGTTCTTCAGTACCATTTGAAATACTAAAAGATCTGGATTATACCG AACTTTCCGGGCTACCTGTTGAGAAAAGAGAAGAGATTGAGCCTGAAATAGAAAAGATAAACAATAAATACTATGCACAG CTTAAATTGATAGAAGAGAAGTTTAAAGATAAGAAGTCGAAGATAGAGAAAGGGGATGAGCTGCCTGCAGGAGTTTTGAA ATCTGTAAGGGTATATCTTGCCGTAAAAAGAAAGTTGATGGTGGGAGATAAGATGGCTGGTAGACATGGTAACAAAGGTG TCATCTCTAGGATCCTTCCAGAGCAAGATATGCCATATTTACCCAACGGTGTCCCTGTGGAGATAGTGTTAAACCCATTG GGGGTTCCCTCAAGAATGAACGTTGGCCAGGTTCTCGAAACCCATCTTGGATGGGCGGCTAAAGCTCTGGGACTTCATAT CGCTACCCCAGTATTCGATGGTGCAAAAGAATCTGACATTAAAGAACTGCTTAAAAAGGCTGGTTTTAATGAAGATGGGC AAACGGTATTGTATGATGGTAGAACCGGTGAGAGGTTTGAACAGGAGGTTACTGTTGGTGTGATGTACGTGATGAAGTTA CATCACCTTGTGGAAACCAAGATGCACGCAAGATCTACCGGGCCATATTCTCTCGTTACCCAGCAACCACTTGGTGGTAA AGCTCAGTTTGGTGGTCAGAGATTGGGAGAGATGGAGGTTTGGGCACTGGAAGCTTATGGTGCATCAAATATTTTGCAGG AGATGCTTACCGTTAAGTCTGATGATGTGGAAGGTAGAACCCGTGTTTATGAATCTATAGTGAATGGTAATTTTAGCTTC AAACCAAGTATGCCTGAGTCTTTCCATGTTCTGATTAAAGAGATGCAGGGTCTCTGTCTGGATGTGGAATTGGTTAAAAA AGAAGATATAAATAATGATGAAAATAATTAA Protein sequence : MNKSTNSIQRVSFSKIKKVLEMPDLVEVQKKSYLDFLQLDVPADKRENKGLEQVFREIFPITDFNETAILEYISYTIEKP KYDAKESIIRKTSYAAPLKVKVRLVCYENSEDGSEKVVASAKESDVYLCDIPLMTDRATFIINGVERVIVSQLHRSPGIF FEDLTAGKSVVEKHLFGSRIIPYRGSWIDFEFDTKNFIYVRIDKKRKILATVLLKALGLSEQDILNTYYKTEVVRFKGLN FERYFEPENLIGRRNSLDIKDEQTGEVIYKAGHKISKGIIRKLTKAGIKKMNCQYEDISETFFAEDIVTKDGELLVKANT KISAEILEKLRENDIEEFKVLLIDSKGSDTAIRDMLEADKIESTEEALLEIYKKMRPGEPATVETAKTYFDNLFFNDKKY DLSRVGRLKINKRLKLDKPLELTTLTKEDIVETIRVLNNIRLGEDDVDDIDHLGHRRVKAVGEQLQNHIRIGMVRMEKTV KERMSIQDTKDLGPQDLLNAKPLSSSIKEFFGSYQLSQFMDQTNPLSEITHKRRLSALGPGGLNRDRAGFEVRDVHTSHY GRLCPIETPEGPNIGLITSLTTYARVNDYGFIETPYRKVENGRVTDEVVYMSAIEEEDYFIAQANAKLDSEGNFLNEYVI ARKKGEIVTVHKDEIQFMDVAPNQIISVSTALIPFLEHDDANRALMGSNMQRQGVPLIRTDAPIVGTGLERKVAIDSGAV LVAKRSGVVQYVDAKTIIIGYTDGDDFGIDVYELDKYRRTNQDTCINYVPLVQKGQKVEKGDIIADGPATDRGDLALGRN VVVAFMPWMGYNYEDSILVSQKLVKEDAYTSIHIEEFEIEARDTKLGPEEITRDIPNVSEEALKDLDESGIIRIGAKVKE GDILVGKVTPKGESQTTPEEKLLRAIFGEKAGDVKDASLRVPSGISGVVIDVVVMTRRGVEKDDRTVKIEKAELQEIQRN YKIEMLTLDETRKSAIAKILENRKLSKAVTLKGESFKKGSSVPFEILKDLDYTELSGLPVEKREEIEPEIEKINNKYYAQ LKLIEEKFKDKKSKIEKGDELPAGVLKSVRVYLAVKRKLMVGDKMAGRHGNKGVISRILPEQDMPYLPNGVPVEIVLNPL GVPSRMNVGQVLETHLGWAAKALGLHIATPVFDGAKESDIKELLKKAGFNEDGQTVLYDGRTGERFEQEVTVGVMYVMKL HHLVETKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASNILQEMLTVKSDDVEGRTRVYESIVNGNFSF KPSMPESFHVLIKEMQGLCLDVELVKKEDINNDENN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 54 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 53 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 52 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 51 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 51 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 49 |
| Calni_1528 | YP_004051599.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 45 |
