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Name : Calni_0580 (Calni_0580) Accession : YP_004050655.1 Strain : Calditerrivibrio nitroreducens DSM 19672 Genome accession: NC_014758 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease, hsdr family Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 607342 - 610560 bp Length : 3219 bp Strand : + Note : COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014021: IPR001650: IPR007409: IPR006935: IPR 014001: IPR004473; KEGG: nis:NIS_1703 type I restriction-modification system, R subun DNA sequence : ATGGGAAAAAACAGTAAATTTCATACTTCAGAATTTAACCTTCATAATTCAATTTCTGAAACAGAAATCGAAAACTTTGC AATAAATCTTCTAAAATCCCAAGGCTACGACTATTTATTTGGTGGTGATATCGCACCAGATGGAGAAAATCCTTTAAGAA AATCCTTTGAAGATGTGATTTTGTTTGATAGGTTAAAAGCTGCTTTAGAAAGGATAAACACAAACTTACCCCAGAATGCA ATAAATGATGCCATAAAACAACTAACACAAATCCACACACCAGATTTAATAGCAAATAACGAAATATTTCACAGAATGCT AACAGAAGGAGTAAAAGTTTTATATCAAAAAGATGGAATAGAAAGAGGCGATATTGTATGGCTTATTGATTTTAAAAATC CTGAAAATAACGACTTTTTAGTAGTTAATCAATTTACAGTTATAGAAAACCGTAAAAATAAAAGACCAGATATTGTTATA TTTATAAACGGACTACCTCTTTTGGTAATAGAGTTAAAAAATCCTGCTGATGAAAACGCTACAATAAAATCAGCCTATAA TCAGATTCAAACCTATAAACAAACAATAGCATCATTGTTTACTTACAATGAAATTTTAGTAATCTCGGATGGACTTAAAG CTAAAATGGGCAGTTTATCAGCTGGATACGATAGATTTATGTACTGGAAAACAGATGATGGTACAAAAGAGGATTCACAT CTTGTAAGCCAACTTGAAACAATGATAAAAGGACTTTTAAATAAAGAAACTCTTATAGACTACATAAGATTTTTTATTTT GTTTGAAAAAACAAAAAAAGAAGATGAAAAAGAACAGACAATCATACAAATGACAAAGAAGATAGCAGGATATCATCAAT ACTATGCAGTAAATAAAGCAGTAGAATCAACAATTAGAGCAATAGGTAGAAACACATCTATTGTTAGAGAAGATCCCGCA ACTTATGGGCTACCTGATGTAAAAACTCAACCTGAGGGAGACAAAAAAGCAGGTGTTGTGTGGCATACACAGGGTTCTGG AAAATCATTATCTATGCTTTTCTATACAGGGAAAATAATTCAGACCATAAATAATCCAACAATTGTTGTTATAACAGATA GAAATGATCTTGACGACCAACTATTTGATACGTTTGCTTCAGCTACACAAATTTTAAGACAGGAGCCAGTTCAGGCTACA AGCAGAGAGCATTTAAAAGAACTTTTAAAAATAGATAGTGGCGGAGTAGTGTTTACAACTATTCATAAATTTTGGCCGGA GAATGGAAATATTTATGAAACTCTATCTTATAGAGATAATATTATCGTAATAGTTGATGAAGCACACAGAACCCAATATG GTTTTAAGGCAAAAGTAGATAAAAATAGTGGAGATATAAAATATGGCTTTGCTAAGTATTTAAGAGATGCTTTACCAAAT GCAACATATATTGCTTTTACTGGTACACCTATAGAGAAAACGGATAGAAACACTCCAGCGGTTTTTGGAAATTATATTGA TATTTATGATATTTCTAATGCTGTAGAAGATGGATCAACAGTCCCAATTTATTATGAAAGCAGACTTGTAAAAATAGATT TAACAGAAGAAGGAAGAAAATTAATAAAAGAATATGAAGAAGAATTAGACGAAAAAGGATTCTCAGAATTAGAAAAGACA AAAGCAAAGTGGACTAAACTTGAAGCATTGGTGGGAGCAAAGCCAAGAATTAAAGAGGTTGCTAAAGATATAGTATCACA TTTTGAAAGCCGACTCGAAGTTATGGATGGAAAAGGGATGATTGTTACCATATCAAGAAAAACTGCCGCTAATCTTTATA AAGAGATTGTAAATTTGCGTCCTGACTGGCACAGTGAAGAACTAAAAAAAGGCAAAATAAAAGTTGTGATGACTACATCT TCTTCAGATGAACCAGAAGTTTCTAAGTTCTACCTAACAAAAGAAGAAAGAAGAATTCTTGCAGACAGATTCAAAGATCC TGAAGATGAGCTTAAGCTCGTTATAGTTGTTGATATGTGGTTAACAGGTTTTGATGTACCTTGCTTACATACAATGTATA TTGATAAACCTATGAAAGGTCATACTCTAATTCAGGCTATCGCAAGGGTAAACAGAGTTTACAATGATAAAACAGGTGGA TTAATAGTTGATTATATTGGTATAGCTTCTGATTTGAAAGATGCTTTATCTTTCTACGCAGAAAGTGGAGGAAAAGGAGA CCCTGTAAAACTACAAGAAAAAGCAATAAGTATAATGCTTGAAAAATTGGAAGTTGTCCGGGATATGTTCTATGGTTTTG ATTACAAAAGATTTTTTACCGCAGACACTTCACAAAAACTAAACATTATCCTTGAAGCTCAAGACTTTATACTTGGACTT GAAAACGGAAAAAAAAGATATATTGATGCTGTTGTTGCTCTATCAAAGGCATTTTCAATAGCAGTCCCTCACCCAAAAGC TATGGAAGTAAAAGAAGAAGTAGCATTTTTTCAAGCTGTAAAATCAGGACTAATAAAGTTTAACACAAATGAAGAACAAG CAGCTGAAAATTACGAAACAGTAATAAAACAAATAGTTGATAAAGCCATCTATTCAAAGGGTGTTATTGATATATTTGAT GCGGCAGGATTAAAAAAACCTGAAATTTCAATTTTATCAGATGAATTTTTAGAAGAAATAAAAGGAATGAAACATAAAAA TTTAGCGATAGAAACACTAAAAAAACTTATAAACGACCAGATTAAAGGAAGAATAAAGATAAATTTAGTAAAAAGCAAGT CTTTAATGAAATCTTTAGAAGATTTAATAAAAAAATACAACAATAAACTTTTAACAGCAGCCCAAGTTATAGATGAACTT ATAAAACTTGCAAAGGAGATAAAAGAAAGCGATAAAGAGCCACAAGAGATGGGTTTATCTGATTACGAGTATGCTTTTTA CTGTGCAGTTGCAGAAAATGAAAGTGCAAAACAACTAATGGGAAAAGAAAAACTTAGGGAGCTTGCTACTGTTTTATATA AAAAAGTAAAAGAAAACACCACTATAGACTGGACTATAAGAGAAAGTGCAAGGTCAAAACTAAAAGTAATAGTAAAAAGA ACTTTAAGACAGTACGGTTATCCACCTGATATGCAAGAACTTGCAACAGAAACTGTTTTAAAGCAGGCTGAGCTTATCGC AAGTGAACTGGTTAATTAG Protein sequence : MGKNSKFHTSEFNLHNSISETEIENFAINLLKSQGYDYLFGGDIAPDGENPLRKSFEDVILFDRLKAALERINTNLPQNA INDAIKQLTQIHTPDLIANNEIFHRMLTEGVKVLYQKDGIERGDIVWLIDFKNPENNDFLVVNQFTVIENRKNKRPDIVI FINGLPLLVIELKNPADENATIKSAYNQIQTYKQTIASLFTYNEILVISDGLKAKMGSLSAGYDRFMYWKTDDGTKEDSH LVSQLETMIKGLLNKETLIDYIRFFILFEKTKKEDEKEQTIIQMTKKIAGYHQYYAVNKAVESTIRAIGRNTSIVREDPA TYGLPDVKTQPEGDKKAGVVWHTQGSGKSLSMLFYTGKIIQTINNPTIVVITDRNDLDDQLFDTFASATQILRQEPVQAT SREHLKELLKIDSGGVVFTTIHKFWPENGNIYETLSYRDNIIVIVDEAHRTQYGFKAKVDKNSGDIKYGFAKYLRDALPN ATYIAFTGTPIEKTDRNTPAVFGNYIDIYDISNAVEDGSTVPIYYESRLVKIDLTEEGRKLIKEYEEELDEKGFSELEKT KAKWTKLEALVGAKPRIKEVAKDIVSHFESRLEVMDGKGMIVTISRKTAANLYKEIVNLRPDWHSEELKKGKIKVVMTTS SSDEPEVSKFYLTKEERRILADRFKDPEDELKLVIVVDMWLTGFDVPCLHTMYIDKPMKGHTLIQAIARVNRVYNDKTGG LIVDYIGIASDLKDALSFYAESGGKGDPVKLQEKAISIMLEKLEVVRDMFYGFDYKRFFTADTSQKLNIILEAQDFILGL ENGKKRYIDAVVALSKAFSIAVPHPKAMEVKEEVAFFQAVKSGLIKFNTNEEQAAENYETVIKQIVDKAIYSKGVIDIFD AAGLKKPEISILSDEFLEEIKGMKHKNLAIETLKKLINDQIKGRIKINLVKSKSLMKSLEDLIKKYNNKLLTAAQVIDEL IKLAKEIKESDKEPQEMGLSDYEYAFYCAVAENESAKQLMGKEKLRELATVLYKKVKENTTIDWTIRESARSKLKVIVKR TLRQYGYPPDMQELATETVLKQAELIASELVN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 48 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 48 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 48 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
