Gene Information

Name : CKC_04985 (CKC_04985)
Accession : YP_004063234.1
Strain : Candidatus Liberibacter solanacearum CLso-ZC1
Genome accession: NC_014774
Putative virulence/resistance : Unknown
Product : DNA-directed RNA polymerase subunit beta
Function : -
COG functional category : K : Transcription
COG ID : COG0085
EC number : -
Position : 1066657 - 1070805 bp
Length : 4149 bp
Strand : -
Note : COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit

DNA sequence : 
ATGGCTAAGGACGTTGTGTTCAATGGTCTCGGGCGTGCGCGCAAATTTTTTGGAAAGATTCCTGAGATAATTGACATACC
TGATCTTATTGAAGTTCAGAGGGCATCCTATGATCAGTTTTTGATGATGAATAGTTCTCCTGAGGAACGTCCTAATGAGG
GTTTACAGGCCGCATTTAAGTCTGTTTTTCCTATTACGGCTTTTTCTGGGGCTGCGATGCTTGAATTTGAGTCTTATGAA
TTTGACTCCCCAAAATTTGATGTGGATGATTGCTTGCGGCGTGATTTGACGTATGCTGCTCCTTTAAAGATTATTTTGCG
TTTGATTGTTTTTGATATTGATGAATTTACTGGTGCAAAATCTATCAAAGATATAAAGGAACAAAGTATCTATATGGGCG
ATGTTCCACTTATGACTAAAGATGGAACTTTTGTTATTAATGGTACTCAGCGTATAGTTGTTTCTCAGTTACATCGTTCT
CCAGGCATACTTTTTGATCATGATAAAGGGAGGGCCAGTTTATCAGGAAAGCTATTGTATGCTTGTCGTATTATTCCTGA
TCAAGGGCTATGGATGGACATAGAATTTGATTCCAAGGATATTATCCATGTGCGTATAGATAGGCGTCGTAAAGTTCCTG
TGACGTCTTTTTTAATGGCTTTGGGTATGAATTCTGAGGATATTTTATCTACGTTTTATTCCAAAATTGTTTATGTAAAA
AAGGGCGAATATTGGTGCTTTCCATTGAGTTGTGCCGATTTGATTGTTGGTTCAAAAGTATCTTCTAGTTTGATTGATGT
TGATACGGGTGAGCGAGTTATTGAAAGCGGGAAAAGGTTTACTGCGAACTTGCTCAAAAATCTTAAAGAAAAAGGGGTAG
GTTTTTTAGGGGTTACTTCAGATTATTTGTATGGATCTTATGTAGCAGAAGATATTGTCAATGAAACAACAGGGGAGATA
TACCTTGAAGCTGGTGATGCAATTGATGAACCTACTCTAGCGGCAATTGTATCTTGTGGAATTGAGGATATACCTGTTCT
CCATGTCGATTCTATTGATTCTAATGCTTATGTGCGTAATACATTAGTATTGGATAAAAACAAAGATTACAAAGATGCAC
TTCTGGATATTTATCGTGTTATGCGTCCAGGTGATGTGCCAACTGTTTCGGCTGCAGAATCGATGTTTAATTTCCTTTTC
TTTGACCCTGATAAGTATGATCTTTCTGCGGTTGGTCGCGTTAAGATGAATATGCGTCTTAATCTTGATGTTCCTGATAC
TGTGCGTCATGTCAGAAAAGAAGATGTGATAGCTATTATCAAAATCTTAGTTGATCTGCGTGATGGTAAGGGGAAGATTG
ATGATATTGATAATTTAGGAAATCGTCGAGTACGTTCTGTCGGTGAGATGTTGAAAAATCAATATCGTCTTGGACTATTG
CGTATGGAACGTTCTATTAAGGAACGCATTTCATCAGTTGATATTGATTCTGTTATGCCACAGGATCTCATTAATGCTAA
GCCTGTAGTATCTGCTGTTCGTGAATTTTTCTGTTCCTCGCAGCTTTCTCAACTTGAAGAACATGTTAACTCGCTTTCGC
GTATTACACATACGCGTCGTTTATCTGCTCTAGGGCAAGGGGGTGTGGCAAGAGCGAGGGCAGGGGTTGAAATGCGTGAT
GTCCATCCAACGCATTACGGTCGTATTTGTCCTGCAGAGACCTCAGAAGGCCATAACATAGGTTTGGTGAGTTCTCTTAC
ATCTTTTGCGCGTGTTAACGCATATGGATTCATTGAAACTCCATATCGTAAAGTTTGTGATGGTAAGGTTACAAATGAGA
TAGTATATCTTTCTGCTATAGAAGAAGAAAATCGTTATATTGCTCAGTCTAATGCTTCTCTTAAAGAGGATGGCTCGTTT
GCGGAAGAATTAGTTTTTTGTCGTTGTGCAGGAGAAGAAGTTCTTGTTCCTCGAGAAAATATAAATTTTATGGACACTTC
TCCAAAACAAGTGGTTTCTATTGCAGCATCTCTTATTCCTTTCTTAGAAAATGATGATTCAAACCGTGTTCTTATGGGTT
GTAATATGCAGCGTCAAGCTGTTCCATTATTGAAGGCCGAAGCTCCTTTTGTTGGGACTGGTATGGAATCTGTCGTTGCC
AAAAGTTCAGGGGCTGCTATTGTTGCGAAGCGTGCTGGAATAGTAGAGCAAGTTGATGCAATACGTATAGTCATTCGTGT
GGTGGAAGAAGATTTAAATCCTTCTGCTTCAGGGGTTGATATTTATCGTTTAATGAAATTTCAGCGTTCCAATCAAAATA
CTTGTGTTAATCAGCGTCCATTAGTAAAGGTTGGTGATGAAGTTCGTAGAAATGATATTATAGCGGATGGTCCATCTACA
GATTTAGGGGATTTGGCGCTTGGTCGTAATATGCTCGTTGCCTTCATGCCTTGGCACGGATACAACTTTGAAGACTCAAT
GTTGATATCTGAGCGTATGGTTTCGGAAGATGTTTTTACCTCTATTCATATAGAGGAATTTGAGGTTATGGCGCGTGATA
CTAAGTTAGGACCAGAAGAAATAACTCGTGATATACCTAATGTCTCGGAAGAGGGATTGAAGAATATTGATGAGTGTGGA
GTTATTTGTGTTGGAGCTGAGGTTAATCCCGGTGATATTTTAGTAGGTAAAATTACTCCTAAGGGTGACAGCCCCATGAC
CCCCGAAGAAAAACTTTTACGTGCTATTTTTGGTGAAAAAGCTGTAGACGTTCGTGATACATCGTTGCGTGTTCCTTCTG
GAGTTTCTGGTACAGTTGTTGAAGTTCGTATTTTTAACCGCCATGGTATTGATAAAAATGAGCGTTCTTTGTCTGTTGAA
CGAGAACAAATCGAGCTTCTTGCACGAGATCGAGATGATGAACAAGCAATTTTAGATCGGAATATTTATAGTCGTTTAAA
GGAAATTTTATGCAGTCAAACAGCGATTTCCGGACCTAAAGGCTTTAAGAAATCTTCTGTTCTTTCTAGTGATTTGATAT
CTGGATATCAGCGATCTCAATGGTGGCAGTTTGCTGTGCAAGATGAGAAAGTGCAGCGGAACATTGAATCTTTAAGAGCT
CAATATGAACATTCTAAATCTGTTCTTGAGAGTCGTTTTAAGAATAAGATTGAAAAGATACAATGGGGGGATGATATGTC
CCCAGGAGTTTTAAGAGTAGTTAAAGTTTTTGTTGCTATGAAGCGTTCAATTCAGTCAGGAGATAAGATGGCTGGACGTC
ATGGTAACAAAGGAATTGTTTCTCGGATACTTCCTTGTGAAGATATGCCTTTTCTTGAAGATGGTACTCCTGTTGATATC
GTTCTTAATCCACTAGGTGTTCCTTCTCGTATGAATGTTGGACAAATTTTTGAGACTCATCTTGGGTGGGCATGTGTTGG
TCTTGGTAAGAAGATTAAGAGTATTATTAATGATTATAAGGCCAATGGTGATATAGCGCCATTACGTAGTTTTTTAGAGA
AGATTATAGGGACTGGTCCTCATGCTGAGAAAATATCAGATTATGATGATGCGTCTGTACTACGTTTGGCAGAACAATGG
AAATCAGGTGTGCCTGTTTCAACGCCTGTTTTTGATGGGGCTGATGAAGAGGCTATTAATTCTATGCTTCGTATGGCTGA
TTTGGATGAAAGTGGGCAGTCCATTCTTTATGATGGTCTGACTGGTGAACCATTTGATCGACCAGTTACCGTTGGGTATA
TTTATATGTTGAAGCTTAATCACATGGTTTCTGATAAAGTTCATGCTCGTTCTATTGGTAGTTATTCTCTTGTGACACAG
CAACCTTTAGGAGGAAAATCTAATAGAGGTGGTCAGCGTTTAGGAGAAATGGAAGTATGGTGTACGCAGGCTTATGGTGC
TGCCTATGTTTTACAGGAAATGCTTACTATTAAATCTGATGATGTTGTAGGTCGTACTAAAGTTTATGAATCTATTGTTT
CTGGAGACAACTCTTTTGAAACTGGTATACCAGAGAGTTTCAATGTCTTGGTAAAAGAAATGCAAGCTTTGGGTCTAAGT
ATTGACTTAGAAAATTCACGTGCAAAAAGTACTGTAAAAATGGAAGAGATTCCTGATTTAAATGAATAA

Protein sequence : 
MAKDVVFNGLGRARKFFGKIPEIIDIPDLIEVQRASYDQFLMMNSSPEERPNEGLQAAFKSVFPITAFSGAAMLEFESYE
FDSPKFDVDDCLRRDLTYAAPLKIILRLIVFDIDEFTGAKSIKDIKEQSIYMGDVPLMTKDGTFVINGTQRIVVSQLHRS
PGILFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMNSEDILSTFYSKIVYVK
KGEYWCFPLSCADLIVGSKVSSSLIDVDTGERVIESGKRFTANLLKNLKEKGVGFLGVTSDYLYGSYVAEDIVNETTGEI
YLEAGDAIDEPTLAAIVSCGIEDIPVLHVDSIDSNAYVRNTLVLDKNKDYKDALLDIYRVMRPGDVPTVSAAESMFNFLF
FDPDKYDLSAVGRVKMNMRLNLDVPDTVRHVRKEDVIAIIKILVDLRDGKGKIDDIDNLGNRRVRSVGEMLKNQYRLGLL
RMERSIKERISSVDIDSVMPQDLINAKPVVSAVREFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRD
VHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNEIVYLSAIEEENRYIAQSNASLKEDGSF
AEELVFCRCAGEEVLVPRENINFMDTSPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA
KSSGAAIVAKRAGIVEQVDAIRIVIRVVEEDLNPSASGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPST
DLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG
VICVGAEVNPGDILVGKITPKGDSPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVEVRIFNRHGIDKNERSLSVE
REQIELLARDRDDEQAILDRNIYSRLKEILCSQTAISGPKGFKKSSVLSSDLISGYQRSQWWQFAVQDEKVQRNIESLRA
QYEHSKSVLESRFKNKIEKIQWGDDMSPGVLRVVKVFVAMKRSIQSGDKMAGRHGNKGIVSRILPCEDMPFLEDGTPVDI
VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSIINDYKANGDIAPLRSFLEKIIGTGPHAEKISDYDDASVLRLAEQW
KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVHARSIGSYSLVTQ
QPLGGKSNRGGQRLGEMEVWCTQAYGAAYVLQEMLTIKSDDVVGRTKVYESIVSGDNSFETGIPESFNVLVKEMQALGLS
IDLENSRAKSTVKMEEIPDLNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00346 YP_008207811.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR25 Protein 0.0 53
BJAB0868_00350 YP_008211676.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR26 Protein 0.0 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_002516.2.881699.p Protein 0.0 55
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta CP000675.2.gene392.p Protein 0.0 55
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta CP001918.1.gene250.p Protein 0.0 54
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta CP001138.1.gene4362. Protein 0.0 54
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta CP000034.1.gene3741. Protein 0.0 54
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_002695.1.914942.p Protein 0.0 54
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_009085.4918494.p0 Protein 0.0 54
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta CP000647.1.gene4402. Protein 0.0 54
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta CP004022.1.gene2794. Protein 0.0 53
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_011586.7046027.p0 Protein 0.0 53
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_010611.6233925.p0 Protein 0.0 53
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_011595.7060572.p0 Protein 0.0 53
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_010400.5987325.p0 Protein 0.0 53
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_010410.6003841.p0 Protein 0.0 53
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta CP002695.1.gene18.p0 Protein 0.0 52
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_008702.1.4609796. Protein 0.0 52
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_011035.1.6448762. Protein 0.0 51
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_002745.1123305.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_007795.3920377.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_009632.5315067.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_009487.5169226.p0 Protein 7e-180 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_009782.5559150.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_002758.1120515.p0 Protein 4e-180 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_002953.2862188.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_013450.8613267.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_007793.3914836.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_003923.1002608.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_009641.5330265.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_002951.3236234.p0 Protein 4e-180 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_010079.5776819.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_002952.2860169.p0 Protein 0.0 45
CKC_04985 YP_004063234.1 DNA-directed RNA polymerase subunit beta NC_007622.3792928.p0 Protein 0.0 45