|
Name : ICDCCJ07001_441 (ICDCCJ07001_441) Accession : YP_004066025.1 Strain : Campylobacter jejuni ICDCCJ07001 Genome accession: NC_014802 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 443337 - 447464 bp Length : 4128 bp Strand : + Note : - DNA sequence : ATGTTAGATAATAAATTAGGAAATCGTTTAAGAGTAGACTTCTCAAACATTTCAAAACAAATAGAAATCCCAAATCTTCT ACAATTACAAAAAAAGAGTTTTGATTATTTTTTAAATCTTGATAATGGTGAAAGTGGTATAGAAAAAGTTTTTAAATCAA TTTTTCCTATTCATGATCCGCAAAATAGATTGAGTCTTGAATATGTTAGTAGTGAAATAGGCAAGCCAAAATATACCATT CGCGAATGCATGGAAAGAGGTTTGACTTATTCTGTAAATTTAAAAATGAAAATCCGTCTTACTCTGCATGAAAAAGATGA AAAAACAGGGGAAAAAGTTGGCGTAAAAGATATTAAAGAACAAGAAATTTATATCCGCGAAATTCCTTTAATGACAGATC GTGTATCTTTTATCATTAATGGGGTTGAGAGGGTGGTTGTAAATCAATTACATAGAAGCCCTGGTGTTATTTTTAAAGAA GAAGAAAGCTCAACGGTTGCAAATAAGCTTGTTTATACAGCACAAATTATTCCTGATCGTGGTTCGTGGCTTTATTTTGA ATACGATGCCAAAGATGTTTTGTATGTAAGAATCAACAAGCGTAGAAAAGTTCCTGTAACTATGCTTTTTAGAGCTTTAG GGTATAAAAAACAAGATATTATTAAGTTGTTTTATCCTATTCAGACTATACATGTGAAAAAAGATAAATTTTTAACAGAA TTTAATCCAAATGATTTTATGGATAGAATAGAATATGATATTAAAGATGAAAAAGGAAAAATCGTTCATCAAGCTGGAAA AAGACTTACAAAGAAAAAAGCAGAACAGCTTATTAAAGACGGTTTAAAATGGATAGAATATCCTGTAGAAATTTTACTTA ATCGTTATTTAGCAAATCCTATTATTGATAAAGAAAGTGGAGAGGTTTTATTTGATTCTTTAACTTTGTTAGATGAAAGT AAGCTTGCTAAGATTAAAGAGCAAAAAAGTTTTGATATAGCAAATGACTTGGCTAATGGCGTTGATGCAGCGATTATTAA CTCCTTTGCTCAAGATGGAGAAACTCTAAAACTTCTTAAACAAAGTGAAAATATCGATGATGAAAATGATTTAGCTGCGA TTAGAATTTACAAAGTTATGCGCCCAGGTGAACCTGTGGTAAAAGATGCAGCGAAGGCTTTTGTAAATGATTTATTCTTC AATCCTGAAAGATACGATCTTACCAAGGTAGGTCGTATGAAAATGAACCATAAGTTAGGTCTTGAAGTGCCTGAGTATGT TACTGTTTTGACTAATGAAGATATTATTAAAACTGCAAAATATTTAATTAAAGTAAAAAATGGTAAAGGACATATTGATG ATAGAGATCATTTAGGAAATCGTCGTATCCGTTCTATAGGTGAACTTTTAGCCAATGAACTTCATTTAGGTCTTGCAAAA ATGCAAAAGGCGATCAGAGATAAATTTACTTCTTTAAATGCGGATCTTGATAAAGTAATGCCTTATGATTTAATCAATCC TAAAATGATTACTGCAACTATCATTGAATTTTTTACAGGAGGTCAGCTTTCGCAATTTATGGATCAAACCAACCCTTTAA GTGAGGTTACTCATAAGCGTCGTTTGTCAGCGCTTGGTGAAGGTGGGCTTGTAAAAGAAAGAGCAGGTTTTGAAGTGCGT GATGTTCACGCGACACATTATGGTAGAATTTGTCCAGTTGAAACACCTGAAGGTCAAAATATTGGTTTGATTAACACTCT TTCTACTTATGCAAAAGTAAATGAACTTGGCTTTGTTGAAGCACCATATAGAAAAGTTGTAAATGGTAAAGTGACTAATG AAGTTGTTTATCTTACAGCAACACAAGAAGAAGGCTTATTTATCGCACCAGCTTCAACTAAGGTTGATGCTAAAGGCAAT ATAGTAGAAGAATTTGTTGAGGCTAGACAAGATGGTGAAACTATACTTGCAAGACGCGAAGAAGTGCAATTAATCGATCT TTGCTCAGGTATGGTTGTTGGGGTTGCGGCTTCTTTGATTCCGTTTTTAGAGCACGATGATGCAAACAGAGCACTAATGG GTTCAAACATGCAACGTCAAGCTGTGCCACTTCTTACTGCTTCAGCTCCGATAGTAGGAACAGGTATGGAACAAATTATT GCGCGTGATGCTTGGGAAGCTGTTAAAGCAAAGCGTGGCGGTGTGGTTGAGAAAGTGGATAATAAAAGCATTTTCATTTT AGGTGAAGATGATAAAGGTCCATTTATTGACCATTATACTATGGAGAAAAATTTAAGAACCAATCAAAATACAAATTATA TTCAACATCCTATTGTTAAAAAAGGTGATATAGTAAAAGCAGGACAAATTATCGCAGATGGTCCTTCTATGGATCAAGGC GAACTTGCTATAGGTAAAAATGCTTTAATCGCTTTTATGCCTTGGAATGGTTATAACTATGAGGATGCTATAGTTGTAAG TGAGAGAATTATTCGTGAAGATACCTTTACAAGCGTGCACATTTATGAAAAAGAAATTGAAGCAAGAGAACTAAAAGACG GCATAGAAGAAATTACCAAAGATATCCCAAATGTAAAAGAAGAAGATGTTGCACATCTTGATGAGAGCGGTATTGCAAAA ATTGGCACCCATATCAAACCAGGTATGATTTTGGTGGGTAAGGTTTCTCCAAAAGGTGAGGTTAAACCAACTCCTGAAGA AAGACTTTTAAGAGCTATTTTTGGGGAAAAAGCAGGACATGTTGTGAATAAATCCCTTTATGCAACCGCTTCTTTAGAGG GTGTTGTTGTGGATGTTAAAATTTTCACTAAAAAAGGCTATGAAAAAGATGATCGCGCAATAAAATCTTATGATAAAGAA AAAATGGCTTTAGAAAAAGAACATCATGATAGACTTTTGATGATGGATAGAGAAGAAATGCTTCGTGTTTGTGCTCTTCT TTCCAAAGCCCCTTTAAATAGTGATCAAAAAATTGGAGATAAAAATTATAAAAAAGGACAAACCGCAGATATTAGCGAAC TTGAAAAAATCAATCGTTTTACTTTAACAACTTTGATTAAAGCTTATTCTAAAGAGATTCAAAAAGAATACGATGATTTA AAAAATCATTTCCAAAATGAGAAGAAAAAATTAAAAGCAGAACACGATGAAAAGCTTGAAATTTTAGAAAAAGATGATAT TTTACCAAGTGGGGTAATTAAGCTTGTTAAAGTTTATATTGCTACAAAGAGAAAGCTTAAAGTCGGTGATAAAATGGCAG GACGTCACGGAAACAAAGGTATAGTTTCAACTATAGTTCCTGAAGTGGATATGCCTTATTTACCAAATGGTAAAAGTGTG GATATTGCACTTAATCCACTTGGCGTTCCAAGTCGTATGAATATAGGCCAAATTTTAGAAAGCCATTTGGGTTTAATTGG ACTTAGACTTGGAGATCAGATTCAAGAAATTTTTGACAGAAAGCAAAAAGATTTTCTTAAAGAATTAAGAGCAAAAATGC TTGAAATTTGTTCTATTCCAAGACTTGCAAGCGAAAAAGAATTTATTAAAAGCTTAAGCGATGAAGAGCTTTTAAACTAT GCTAGAGACTGGAGTAAAGGAGTTAAATTTGCTACTCCTGTTTTTGAAGGTGTAAATATAGAAGAATTTAGCAAGCTTTT TGAAATGGCCAAGATAGATATGGACGGCAAAACAGAACTTTATGATGGACGCACGGGTGAGAAAATCGCAGAGCGTGTTC ATGTAGGATGTATGTATATGCTAAAACTCCACCACTTGGTTGATGAGAAAGTTCACGCAAGAAGTACAGGACCTTACAGC TTAGTTACCCAACAACCTGTGGGTGGTAAAGCACTCTTTGGGGGACAAAGATTTGGGGAGATGGAAGTTTGGGCACTTGA AGCTTATGGAGCGGCTCATACTTTAAGAGAAATGTTAACTATCAAATCAGACGATGTAGAAGGTAGATTTAGTGCTTATA AAGCATTGACAAAAGGTGAAAATGTTCCAGCAACAGGAATTCCTGAAACATTTTTTGTATTAACCAATGAGCTTAAATCT CTTGCTTTAGATGTTGAGATTTTTGATAAGGATGAAGATAATGAGTAA Protein sequence : MLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLDNGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTI RECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKE EESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTE FNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDES KLAKIKEQKSFDIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFF NPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLGLAK MQKAIRDKFTSLNADLDKVMPYDLINPKMITATIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVR DVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGN IVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQII ARDAWEAVKAKRGGVVEKVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGPSMDQG ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAK IGTHIKPGMILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKE KMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIKAYSKEIQKEYDDL KNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSV DIALNPLGVPSRMNIGQILESHLGLIGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLASEKEFIKSLSDEELLNY ARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKLHHLVDEKVHARSTGPYS LVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKS LALDVEIFDKDEDNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 48 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 48 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 46 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| ICDCCJ07001_441 | YP_004066025.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 46 |
