Gene Information

Name : Astex_1612 (Astex_1612)
Accession : YP_004087429.1
Strain :
Genome accession: NC_014816
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone clpb
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1738443 - 1741022 bp
Length : 2580 bp
Strand : -
Note : TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: pzu:PHZ_c0774 ATP-dependent Clp protease, ATP-binding subunit; SMART: AAA ATPase

DNA sequence :
ATGAATATCGAAAAATACTCCGAGAAAACTCAAAAGCTTATCCAAAGCGCGCAGGCTATTGCCCAAAGCCGCAACCATCA
GTATTTCACTCCGCTGCATCTGCTCAAGGCGCTGAGCGAGGACCGCGAGTCCGTTGCGCGGCCTTTGATTGAGCGCGCGG
GCGGACGCCCAGAAGCCTTTGTCGGTGCTGTCGATGCGACACTGAACAAGCTGCCGTCCGTCACCGGTGGCACGCAGCAG
CTCTATATGCACAATGATACCGCCAAGGCCTTCACCGATGCGGAAAATGACGCCAACAAGGCAGGCGACGCCTTCGTCAC
CGCCGACCGTTTGCTGGTCGCCGCGCTGAACAACAGCGACGGCGCGGCCTTGCTCAAGGCGGCGGGCACGTCGCTGGGGG
CGCTGAAGGACGCGCAGAAGGAATTTCGCAAGGGCAAGCCCGCCAACTCCTCCAATGCCGAGGCCGGTTTCGATGCGCTC
AACAAATATGCGCGGGACCTCACGCAGGCGGCGCTGGATGGTAAGATCGACCCGGTCATTGGACGCGATGAGGAAATTCG
CCGGACCATTCAGGTGTTGGCCCGTCGCACTAAGAACAACCCTGTACTGATCGGTGAGCCAGGTGTTGGTAAGACCGCCA
TTGTCGAAGGTCTGGCGCAACGAATCGTCAATGGCGACGTGCCGGAATCGCTGAAAGACAAGAAGCTTTTGTCGCTCGAC
ATGGGCGCTTTGATCGCCGGGGCCAAGTACCGCGGCGAGTTCGAGGAACGTCTAAAGTCTGTCCTAAATGAGGTTACGCA
GGCCGAAGGTCAGATTGTTCTGTTTATCGACGAAATGCACACGCTTGTCGGTGCCGGTAAGTCCGACGGGGCGATGGATG
CGTCGAACCTGCTGAAACCGGCTCTGGCGCGCGGTGAATTGCACTGCGTCGGTGCGACGACGCTCGATGAGTACCAGAAG
CATGTCGAAAAGGACCCGGCTCTGGCTCGGCGTTTTCAGCCCGTTTTTGTTCAGGAACCGACTGTCGAAGACACCATTTC
TATCCTGCGCGGACTGAAGGAAAAGTACGAGGTTCACCACGGCGTCAAGATTTCCGACAGCGCCATCGTGGCGGCTGCCA
CCCTGTCGAACCGCTATATTGCCGATCGCTTTCTTCCGGACAAGGCCATTGACCTGATCGACGAGGCCGGCTCGCGCGTG
CGTATGGCTGTCGATTCCAAGCCGGAAGAATTGGATGAGCTGGACCGCCGCATCGTCCAGCTCAAAATCGAGCGCGAGGC
CTTACAGAAGGAAAGCGATCAGGGCTCAAAAACGCGCCTGGAAAAGCTCAATGAGGAGTTGGGCGATCTGGAGGGCAAGT
CGGCCCATCTGACCGCTCGCTGGCAGTCGGAAAAGGACAAGGTCGGGGCCGCCTCGCGCGCTCGCGAAGCTCTGGACCGC
GCGCGTATCGAGCTTCAGTCGGCGCAGCGTTCGGGAGACCTCCAACGGGCGTCGGAAATTCTCTATGGTCAGATTCCGCA
ACTGGAAAAAATGGTCGCTGAGGCTGAAACCAACTCGGAAGAGGCCCCGCTGACTCCGGAAGTCGTTGATTCGGCGCAGA
TTGCTCAGGTGGTCTCGCGCTGGACCGGTATTCCGGTAGACAAGATGATGGAGGGCGAGCGTGACAAGCTGCTACGCATG
GAGGACGAACTGCGCAAGCGCGTCGTCGGTCAGGACGAAGCTCTTGAAGCCGTGTCCGATGCCGTGCGCCGGGCGCGGGC
AGGGCTCAAAGACCCCAATCGTCCGATCGGTTCATTCCTATTTCTTGGGCCGACAGGCGTCGGCAAGACTGAGTTGAACA
AGGCGTTGGCAGAATTCCTGTTCGACGATGAGACCGCCATCACGCGCCTCGACATGTCCGAATATATGGAAAAGCATGCG
GTTTCGCGCATGATCGGCGCGCCTCCGGGCTATGTCGGCTATGACGAGGGCGGGGCGCTGACGGAAGCCGTGCGCCGCCG
GCCCTATCAAGTCGTGCTGTTTGACGAGGTCGAAAAGGCACATCCGGACGTGTTCAACGTCCTGCTTCAGGTGCTGGACG
ATGGAAGGCTGACAGACGGGCAGGGGCGTGTGGTCGATTTCCGCAACACACTGATCGTCATGACGTCCAATCTGGGGTCG
CAGTATCTCGTCAATATGGAGGATGATCAGGACGTCGAAATGGTGCGCGGTTTGGTTATGGATGAGGTTAAGCGACACTT
CCGGCCGGAATTTCTCAATCGCATAGACGAAACTATTCTCTTCCACCGGCTAGGTCGGGCTCAAATGGGCAATATAGTGC
GTATCCAGCTCAAGGGTCTGGAAAAGTTGCTGAAGGATCGTCAGATGACACTCGCCATCGACGACGCGGCGCTCAACCAC
CTGGCGGAACTGGGATACGAACCGGCCTATGGCGCGCGTCCGCTCAAGCGTGTAATTCAGAAACAATTGGTCGATGCGAT
CGCCAAACGCATCCTTGTGGGGGCGTTCGCCGATGGTGATGTGATCAGTGTCAGCTTTGACGGCGATCATCTTGTTATCG
GCAAGCCGACGGTTAACTAA

Protein sequence :
MNIEKYSEKTQKLIQSAQAIAQSRNHQYFTPLHLLKALSEDRESVARPLIERAGGRPEAFVGAVDATLNKLPSVTGGTQQ
LYMHNDTAKAFTDAENDANKAGDAFVTADRLLVAALNNSDGAALLKAAGTSLGALKDAQKEFRKGKPANSSNAEAGFDAL
NKYARDLTQAALDGKIDPVIGRDEEIRRTIQVLARRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKDKKLLSLD
MGALIAGAKYRGEFEERLKSVLNEVTQAEGQIVLFIDEMHTLVGAGKSDGAMDASNLLKPALARGELHCVGATTLDEYQK
HVEKDPALARRFQPVFVQEPTVEDTISILRGLKEKYEVHHGVKISDSAIVAAATLSNRYIADRFLPDKAIDLIDEAGSRV
RMAVDSKPEELDELDRRIVQLKIEREALQKESDQGSKTRLEKLNEELGDLEGKSAHLTARWQSEKDKVGAASRAREALDR
ARIELQSAQRSGDLQRASEILYGQIPQLEKMVAEAETNSEEAPLTPEVVDSAQIAQVVSRWTGIPVDKMMEGERDKLLRM
EDELRKRVVGQDEALEAVSDAVRRARAGLKDPNRPIGSFLFLGPTGVGKTELNKALAEFLFDDETAITRLDMSEYMEKHA
VSRMIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRVVDFRNTLIVMTSNLGS
QYLVNMEDDQDVEMVRGLVMDEVKRHFRPEFLNRIDETILFHRLGRAQMGNIVRIQLKGLEKLLKDRQMTLAIDDAALNH
LAELGYEPAYGARPLKRVIQKQLVDAIAKRILVGAFADGDVISVSFDGDHLVIGKPTVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-106 42
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 4e-105 41
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 3e-105 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Astex_1612 YP_004087429.1 ATP-dependent chaperone clpb VFG2084 Protein 7e-115 43