|
Name : Astex_2990 (Astex_2990) Accession : YP_004088777.1 Strain : Genome accession: NC_014817 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 674897 - 678970 bp Length : 4074 bp Strand : - Note : KEGG: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 7; RNA polymerase beta subunit; DNA sequence : ATGGCCTTATCGTTCACCGAAAAGAAGCGGATTCGGAAGTCTTTTGGCCGAATCCCCGAAGCGATCCGTATGCCGAACCT GATCGAGGTTCAGCGCTCCTCCTACGAACAATTCCTGCAACGTTTCGTCCGCGCTTCGGAGCGCGTTGACGACGGTCTGG AGGCTGTGTTCAAGAGCGTCTTCCCGGTCAAGGATTTCAACGAGCGTGCGACCCTCGAATACGTCTCTTACGAGTTCGAA GAGCCGAAATACGACGTCGAAGAGTGCATTCAGCGCGACATCACCTATGCCGCCCCGCTGAAGGTCAAGCTGCGCCTGAT CGTGTTTGAAACGGACGAGGACACGGGTGCCCGTTCGGTAAAGGATATCAAGGAGCAGGACGTTTATATGGGCGATATCC CGCTCATGACGGACAAGGGCACCTTTATCGTCAACGGCACCGAGCGCGTGATCGTGTCGCAGATGCACCGTTCGCCGGGC GTCTTCTTCGACCACGACAAGGGCAAGACCCATTCGTCGGGTAAGCTCCTGTTCGGCGCGCGCATCATTCCGTACCGTGG CTCGTGGCTCGATTTCGAATTCGACGCCAAGGACATCGTCTATGTGCGTATCGACCGTCGCCGCAAGCTGCCCGCCACGA CCTTCCTGTCTGCCCTGGGCATGGACGGCGAAGAAATCCTCACCACCTTCTACGACGTTGTGCCCTATGAGAAGCGCGAT GCCGGTTGGGTCACGCCGTACAAGTTCGAGCGCTGGCGCGGTGTGAAGCCGGAATTCGACCTGATCGACGCCGATAGCGG TGAAGTGGTCGCGCAGGCCGGGACCAAGATTTCGGCGCGTACCGCCAAAAAGCTGGGCGACACGGTGAAGGCGCTGTTGC TGTCGCCGGACGCCCTGAATGGCAAGTATCTGGCGCGCGATGCGGTCAATTTTGAGACCGGTGAAATCTACGCCGAAGCC GGTGACGAGCTTGATCCTGCCGCCATCAAGGTGCTGGAAGAGCAGGGCTTCACCACCATTGATGTGCTCGATATCGACCA TGTGACCGTGGGCGCCTATCTGCGCAACACGCTGCGCGTCGATAAGAACACCTCGCGTGAAGATGCGCTGTTCGACATTT ATCGCGTCATGCGTCCGGGCGAGCCGCCCACGATCGAAGCCGCCGAAGCCATGTTCCAGGGCCTGTTCTTCGAACTGGAG CGCTACGACCTGTCGGCCGTGGGTCGCGTCAAAATGAACATGCGTCTTGAGCAGGACGTCGCCGACTCTGAGCGCACCCT GCGCAAGGATGACATTCTGAAGATCCTGCGCATCCTGATCGGTCTGCGCGATGGTCGCGGCGAAATCGACGATATCGACA ACCTCGGTAACCGTCGCGTGCGTTCGGTGGGCGAGTTGCTGGAAAACCAGTACCGCGTCGGCCTGCTGCGCATGGAACGC GCCATCAAGGAGCGCATGTCGTCGGTTGATATCGACACCGTCATGCCACACGACCTGATCAACGCCAAGCCGGCTGCGGC CGCGGTGCGTGAATTCTTTGGTTCGTCGCAGCTCTCGCAGTTCATGGACCAGACGAACCCGCTGTCGGAAATCACGCACA AGCGTCGTCTGTCGGCCCTTGGGCCGGGCGGTCTGACGCGCGAACGCGCGGGCTTCGAAGTCCGCGACGTGCACCCGACC CACTATGGCCGTATCTGCCCGATTGAAACGCCGGAAGGCCCGAACATCGGCCTGATCAACTCACTGGCCACCCATGCCCG CGTCAACAAGTACGGCTTCATCGAAAGCCCGTACCGCAAGGTCATCGACGGCAAGCCGCAGGACGAAGTCGTCTATATGT CGGCGATGGAAGAGTCCAAGCACGTCATCGCTCAGGCCAATATCAAGCTGGGTGACGAAGGTATTGTCGAAGACCTCGTG CCGGGCCGCGTCAACGGCGAACCGGGCCTGCAACCGGCCCCGACCGTCGATTACATGGACGTGTCGCCGAAGCAGGTCGT TTCGGTCGCCGCCGCCCTGATCCCGTTCCTCGAAAACGACGACGCCAACCGCGCGCTGATGGGTTCGAACATGCAGCGTC AGGCCGTGCCGCTGGTGAAGGCGGATGCGCCCTTCGTCGGCACCGGCATGGAATCGGTCGTCGCCCGCGACTCCGGGGCT ACCATTGCCGCCCGCCGTACCGGCGTGATCGAGCAGGTGGACGCCACCCGTATCGTCGTGCGCGCCACGGATGAACTCGA CCCCACCAAGCCGGGCGTCGATATCTATCGTCTGTCGAAGTTCCAGCGTTCCAACCAGAACACCTGTATCAACCAGCGTC CGATCGTGAACGTCGGTGACAAGGTGTCGGCCGGTGACATCATCGCCGACGGTCCGTCTACCGACCTCGGCGATCTGGCT CTGGGCCGCAACGTCCTCGTGGCCTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCGATCCTGATTTCCGAACGCAT CGTGCGCGACGACATCTTCACCTCTATCCACCTGGAAGAGTTTGAAGTCATGGCCCGCGATACGAAGCTTGGGCCGGAAG AAATCACCCGCGACATCCCGAACGTCGGCGAAGAAGCCCTGCGAAACCTCGACGAGGCCGGTATCGTGGCTATCGGTGCC GAAGTGCAACCGGGCGACATTCTCGTCGGTAAGGTCACGCCGAAGGGCGAAAGCCCGATGACACCGGAAGAAAAGCTGCT GCGCGCCATCTTCGGTGAAAAGGCGTCAGACGTGCGCGATACGAGCTTGCGTCTGCCCCCCGGCGTCGCCGGTACCATCG TTGAAGTCCGCGTCTTTAACCGTCACGGTGTGGACAAGGACGAACGCGCTATGGCTATCGAGCGCGCCGAAATCGAGCGT CTGGGCAAGGACCGCGACGATGAACTGTCGATCCTTGAGCGCAACATCTATGGCCGCCTGAAGGAAGTCATCCTCGGTCA GACCGCCGTTTCGGGCCCGAAGGGTCTGGGTCGCGGTGAAATCACCGAAGAGAAGCTCTCCGAAATCTCGAAGGGCCTGT GGTGGCAGATCGCCCTCGAAGACGAGAAGCTGATGGGCGAACTGGAGGCCATGAAGCGCCAGTTCGAAGAGGCCCGCAAG CGTCTGGACCGTCGCTTCGAGGACAAGGTCGAAAAGCTGCAACGCGGCGACGAATTGCCGCCGGGCGTCATGAAGATGGT CAAGGTCTTCGTGGCCGTGAAGCGCAAGCTTCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGGGTTATCT CCAAGATCCTACCCGTCGAAGACATGCCGTTCCTCGCCGATGGTGAGCACGTCGATATCGTGCTGAACCCGCTGGGCGTG CCGTCGCGCATGAACGTCGGTCAGATCTTCGAAACCCACCTCGGCTGGGCCTGCGCCAATATCGGCAAGCAGATCACCAA CCTGCTCGAAGAGTGGCAGAACGGCGGTCAGAAGCAGGCGCTTATCGACCACCTGAAGGGTGCCTATGGTGCCGATCAGG AACTGCCGGAAACGGAAGAAGAGCTGATTCAGCTGGCGAAGAACCTCGCGCGCGGCGTGCCGATCGCGACCCCGGTCTTC GACGGTGCGCACATCAACGACATCGAGAACATGCTTGAGTTTGCGGGTCTCGATCGTTCGGGTCAGTCGATCCTGTACGA TGGTCTGACGGGTGAGCAGTTCAAGCGTCCGGTCACCGTCGGCATCATCTACATGCTGAAGCTGCACCACCTTGTCGATG ATAAGATCCACGCACGCTCCATCGGGCCATACTCGCTCGTCACCCAGCAGCCGCTGGGCGGTAAGGCGCAGTTCGGCGGT CAGCGCTTCGGGGAAATGGAGGTCTGGGCTCTGGAAGCCTATGGTGCCGCCTATACCCTGCAAGAAATGCTGACCGTGAA GTCGGACGACGTGGCCGGCCGGACCAAGGTGTACGAAGCCATCGTCCGCGGCGATGACAGCTTCGAAGCCGGTATCCCGG AAAGCTTCAACGTCCTGATCAAGGAAATGCGTTCGCTGGGTCTGAACGTGGAACTGGAAAACGGGCAGGGATAA Protein sequence : MALSFTEKKRIRKSFGRIPEAIRMPNLIEVQRSSYEQFLQRFVRASERVDDGLEAVFKSVFPVKDFNERATLEYVSYEFE EPKYDVEECIQRDITYAAPLKVKLRLIVFETDEDTGARSVKDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPG VFFDHDKGKTHSSGKLLFGARIIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLSALGMDGEEILTTFYDVVPYEKRD AGWVTPYKFERWRGVKPEFDLIDADSGEVVAQAGTKISARTAKKLGDTVKALLLSPDALNGKYLARDAVNFETGEIYAEA GDELDPAAIKVLEEQGFTTIDVLDIDHVTVGAYLRNTLRVDKNTSREDALFDIYRVMRPGEPPTIEAAEAMFQGLFFELE RYDLSAVGRVKMNMRLEQDVADSERTLRKDDILKILRILIGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMER AIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPT HYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPYRKVIDGKPQDEVVYMSAMEESKHVIAQANIKLGDEGIVEDLV PGRVNGEPGLQPAPTVDYMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPFVGTGMESVVARDSGA TIAARRTGVIEQVDATRIVVRATDELDPTKPGVDIYRLSKFQRSNQNTCINQRPIVNVGDKVSAGDIIADGPSTDLGDLA LGRNVLVAFMPWNGYNFEDSILISERIVRDDIFTSIHLEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGA EVQPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGVDKDERAMAIERAEIER LGKDRDDELSILERNIYGRLKEVILGQTAVSGPKGLGRGEITEEKLSEISKGLWWQIALEDEKLMGELEAMKRQFEEARK RLDRRFEDKVEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKILPVEDMPFLADGEHVDIVLNPLGV PSRMNVGQIFETHLGWACANIGKQITNLLEEWQNGGQKQALIDHLKGAYGADQELPETEEELIQLAKNLARGVPIATPVF DGAHINDIENMLEFAGLDRSGQSILYDGLTGEQFKRPVTVGIIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGG QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDSFEAGIPESFNVLIKEMRSLGLNVELENGQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 61 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 60 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 60 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 60 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 59 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| Astex_2990 | YP_004088777.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 57 |
