Gene Information

Name : Tmar_2325 (Tmar_2325)
Accession : YP_004103129.1
Strain : Thermaerobacter marianensis DSM 12885
Genome accession: NC_014831
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 2788284 - 2790803 bp
Length : 2520 bp
Strand : -
Note : COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR001943: IPR001270: IPR003593: IPR004176: IPR 003959: IPR013093: IPR019489: IPR018368; KEGG: sth:STH3133 class III stress response-related ATPase; PFAM: ATPase AAA; Clp domain pr

DNA sequence :
ATGTTCGGCCGTTATTCGGAGCGGGCCCAGCGGGTCATCCTGCTGGCCCAGGAAGAGGCGCGCCGCTTGAACTACAACTA
CGTGGGCACCGAGCACCTGCTGCTGGGCTTGATCCGGGAGGGCACCGGCATCGCCGCCAAGGCGCTGCAGAGCCTGGGCA
TCAACCTGGAGCAGGTCCGGGCGGAGGTGGAGAAGATCATCGGCCGCGGCAACGGGCCGATCCAGGGCGAGATCGGCTAC
ACGCCGCGGGCCAAGAAGGTGGTCATGGAGCTGGCCCCCGAGGAGGCCCGCCTGCTGGGCCACAACTACGTGGGCACCGA
GCACATCCTGCTGGGCCTGATCCGCGAGGGCGAGGGTGTGGCCGCCAAGGTCCTGGAGAACATGGGCGCCGACCTGGACC
GGGTGCGGCAGACGGTGATCAAGCTTCTGGGCGGCACCGCGGCGCCGGCGCCCGCCGCCCGCCAGCGCCGGCAGAAGAGC
ACCACGCCGGTGCTGGACAACTTCGGCCGCGACCTGACCCAGATGGCCGAGGAGGGCAAGCTGGACCCCGTCATCGGCCG
GGACAAGGAGATCGAACGGGTGATCCAGATCCTCTCCCGGCGCACCAAGAACAACCCGGTGCTGATCGGTGAGCCGGGCG
TCGGCAAGACGGCCATCGTCGAGGGCCTGGCCCAGCGCATCGCCGAGGGCAAGGTGCCCGAGATCCTCAAGGACCGCCGG
GTGGTGTCCCTGGACCTGGGCGCCCTGGTGGCCGGCTCCAAGTACCGCGGCGAGTTCGAAGAGCGCCTGAAGAAGGTCAT
GGACGAGATCCGCCGCGCCGGCAACATCATCCTGTTCATCGACGAGATGCACACCATCATCGGCGCCGGCGCGGCCGAGG
GCGCCATCGACGCGGCCAGCATCCTCAAGCCGGCCCTGGCCCGTGGTGAGCTGCAGACCATCGGCGCCACGACCCTGGAC
GAGTACCGCAAGCACGTGGAGAAGGATGCCGCCCTGGAGCGCCGCTTCCAGCCCATCATGGTGGAGGAACCCAGCGTGGA
GGACGCCATCCAGATCCTCCGCGGCCTGCGGGACCGGTACGAGGCGCACCACCGGGTGGAGATCACCGACGACGCCATCG
TGGCGGCGGTGAAGCTGGCCGACCGGTACATCTCCGACCGGTTCCTCCCCGACAAGGCCATCGACCTCATCGACGAGGCG
GCCTCGCGGGCGCGCCTGCAGGCCTTCGTGGCGCCGCCCGAGCTCAAGGAGATCGAGCAGCGGCTGGAGGAGATCCGCAA
GGAGAAGGAGGCGGCCGTCCAGTCCCAGGAGTTCGAGAAGGCCGCCAACCTCCGCGACCAGGAGCAGAAGCTGGTCGAGG
AGCTGGAGCGCAAGAAGAACGAGTGGCAACAGCAGCAGCTCAACGAGAAGATCGTGGTGACCGCCGACGACATCGCCCAG
ATCGTCTCCAACTGGACGGGCATCCCCGTCCGGCGCCTGGAGCAGGCGGAGAGCGAGCGGCTGCTCAAGCTGGAGGAGAT
CCTGCACGAGCGCATCGTCGGCCAGGACGACGCCGTCAAGGCGGTGGCGCGGGCCATCCGGCGCGCCCGGGCCGGCCTCA
AGGACCCGCGGCGGCCCATCGGCTCCTTCATCTTCCTGGGACCCACGGGCGTCGGCAAGACGGAGCTGGCCAAGGCGCTG
GCCGAGGCCCTCTTCGGCGACGAGGACGCCATGATCGTCCTGGACATGTCCGAGTACATGGAGCGGCACACGGTCTCGCG
GCTGGTGGGCTCGCCGCCGGGGTACGTGGGCTATGAGGAGGGCGGCCAGCTGACCGAGCAGGTGCGCCGCCGGCCCTACT
CGGTGGTGGTCTTCGACGAGATCGAGAAGGCCCACCCCGAGGTCTTCAACGTGCTGCTGCAGATCCTGGAGGAGGGCCGG
CTGACCGAGGCCAAGGGCCGCACCGTGGACTTCCGCAACACGGTGATCATCATGACCTCCAACGTCGGGGCCGACCTGAT
CCGGCGCCAGACCCGGGTGGGCTTCCAGGCCGGCGACCAGGAGGCGCCCGATTACGAGGACATGAAGCGGAAGATCATGG
ACGAGGTGAAGCGCACCTTCCGGCCCGAGTTCCTGAACCGGATCGACGAGCTCATCGTCTTCCACGCCCTGACGGAAGAG
CACCTGATGCGCATCGTCGACCTGATGCTCAAGCGCGTGGCCCAGCGGCTCAAGGAGCACGGGCTGGAGCTGGAGGTCAC
CGAGGCGGCCAAGCGCAAGCTGGTGAAGGAAGGGGCCGACGTGGTCTACGGCGCCCGGCCCCTGCGCCGCACCATCACCC
GGCTGGTGGAGGACCCGCTCTCGGAGGAGATGCTGGCCGGCCGCTTCAAGGAAGGCGACACCGTGGTGGTCGACGTGGAC
GAGGAGGGCCGCATCGTCTTCCGCCAGGCCGAGCAGGTGGGGGCCGCCGCGACCGCGGCGCCCGCTGCGCCCGCTGCGCC
GGACGGCCCGGCCGGCGGGGACGAACCGGCGGCGCAGTGA

Protein sequence :
MFGRYSERAQRVILLAQEEARRLNYNYVGTEHLLLGLIREGTGIAAKALQSLGINLEQVRAEVEKIIGRGNGPIQGEIGY
TPRAKKVVMELAPEEARLLGHNYVGTEHILLGLIREGEGVAAKVLENMGADLDRVRQTVIKLLGGTAAPAPAARQRRQKS
TTPVLDNFGRDLTQMAEEGKLDPVIGRDKEIERVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIAEGKVPEILKDRR
VVSLDLGALVAGSKYRGEFEERLKKVMDEIRRAGNIILFIDEMHTIIGAGAAEGAIDAASILKPALARGELQTIGATTLD
EYRKHVEKDAALERRFQPIMVEEPSVEDAIQILRGLRDRYEAHHRVEITDDAIVAAVKLADRYISDRFLPDKAIDLIDEA
ASRARLQAFVAPPELKEIEQRLEEIRKEKEAAVQSQEFEKAANLRDQEQKLVEELERKKNEWQQQQLNEKIVVTADDIAQ
IVSNWTGIPVRRLEQAESERLLKLEEILHERIVGQDDAVKAVARAIRRARAGLKDPRRPIGSFIFLGPTGVGKTELAKAL
AEALFGDEDAMIVLDMSEYMERHTVSRLVGSPPGYVGYEEGGQLTEQVRRRPYSVVVFDEIEKAHPEVFNVLLQILEEGR
LTEAKGRTVDFRNTVIIMTSNVGADLIRRQTRVGFQAGDQEAPDYEDMKRKIMDEVKRTFRPEFLNRIDELIVFHALTEE
HLMRIVDLMLKRVAQRLKEHGLELEVTEAAKRKLVKEGADVVYGARPLRRTITRLVEDPLSEEMLAGRFKEGDTVVVDVD
EEGRIVFRQAEQVGAAATAAPAAPAAPDGPAGGDEPAAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 63
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 8e-94 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmar_2325 YP_004103129.1 ATPase AAA VFG0079 Protein 0.0 65
Tmar_2325 YP_004103129.1 ATPase AAA VFG0080 Protein 7e-144 52