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Name : Rpdx1_2165 (Rpdx1_2165) Accession : YP_004108494.1 Strain : Rhodopseudomonas palustris DX-1 Genome accession: NC_014834 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 2327040 - 2331164 bp Length : 4125 bp Strand : + Note : KEGG: bra:BRADO3054 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA DNA sequence : ATGGCGCAGCAGACGTTCACCGGTCGCAAACGCGTTCGCAAGTTTTTCGGTCACATCCGGGAAGTCGCGGAGATGCCGAA CCTCATCGAGGTTCAGAAGGCGTCCTACGACCAGTTCCTGATGGTCGCCGAGCCGCCCGGCGGGCGGCCTGACGAGGGTC TGCAGGCGGTGTTCCGGTCGGTGTTCCCGATCTCGGACTTCTCCAACGCCTCGATGCTCGAATTCGTGCGCTACGAATTC GAGCCGCCGAAGTACGACGTCGACGAGTGCCGCCAGCGCGGCATGACCTACGCAGCGCCGCTGAAGGTGACGCTGCGCCT CATCGTGTTCGATATCGACGAGGAAACCGGCGCCCGCTCCGTCAAGGACATCAAGGAGCAGGATGTCTACATGGGCGACA TCCCGCTGATGACGATGAACGGTACCTTCATCGTCAACGGCACCGAGCGCGTGATCGTCTCGCAGATGCACCGGTCGCCG GGCGTGTTCTTCGACCACGACAAGGGCAAGACCCACTCGTCGGGCAAGCTGCTGTTCGCCGCCCGTATCATCCCGTATCG CGGTTCCTGGCTCGACATCGAGTTCGACGCCAAGGACATCGTCTATGCGCGTATCGACCGTCGCCGCAAGCTGCCGGTGA CGTCGCTGATGTTCGCCCTCGGCCTCGACGGCGAAGAGATCCTGTCGACCTTCTACAACAAGATCCTCTACAAGCGCACC AAGGACGGCTGGCGCGTGCCGTTCGACGTCAACCGCTTCCGTGGCTATTCGACCGTCAACGACCTGATCGACGCCGACAC CGGCAAGGTCGTGCTCGAGGCCGGCAAGAAGCTGACCGTGCGCGCCGCCCGCCAGCTCCAGGAGAAGGGGCTCAAGGCGC TGCGGATGTCCGACGAGGAGCTCGTCGGCAACTACCTCGCCGAGGATCTGGTCAACCCGAAGACCGGCGAAATCTACGCG GAAGCCGGTGAGGAGATCACCGACAAGGCCCTGAAGATGCTCAACGAGCAGGGCTACAAGGAACTGCCGCTGCTCGACAT CGACCACGTCAATGTCGGCCCCTACATCCGCAACACCCTCAACGTCGACAAGAACATGACGCGCGAGGACGCGCTGTTCG ACATCTACCGGGTGATGCGTCCGGGCGAGCCGCCGACGCTGGAATCCGCGCAGAACATGTTCCAGTCGCTGTTCTTCGAC GCCGAGCGCTACGACCTGTCAGCGGTCGGCCGCGTCAAGATGAACATGCGCCTCGACCTCGATGCGCCCGACACCCATCG CACGCTGCGCAAGGAGGACATCCTGGCGGTGATCAAGACCCTGGTCGGCCTGCGGGACGGCAAGGGCGAGATCGACGACA TCGACCACCTCGGCAACCGCCGGGTGCGCTCGGTCGGCGAACTGATGGAGAACCAGTACCGCATCGGTCTGCTCCGCATG GAGCGCGCCATCAAGGAGCGGATGAGCTCGGTCGACATCGACACCGTGATGCCGCAGGACCTGATCAACGCCAAGCCGGC GGCGGCGGCGGTGCGCGAGTTCTTCGGCTCGTCGCAGCTCTCGCAGTTCATGGACCAGACCAATCCGCTGTCGGAGATCA CCCACAAGCGGCGCCTGTCGGCGCTCGGCCCGGGCGGTCTGACCCGCGAGCGCGCCGGCTTCGAAGTCCGCGACGTGCAT CCGACCCATTACGGCCGGATCTGCCCGATCGAGACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTGGCGACCTT CGCCCGCGTGAACAAGTACGGCTTCGTCGAGACCCCGTATCGCAGGGTCAAGGATGGCCATGTCACCGACGAGGTGGTCT ACCTCTCGGCGATGGAGGAGGGGCGTTACGCGGTCGCGCAGGCCAACGTTCCGCTCGATGCCAAGGGCCGCTTCACCGAC GACCTGATCGTCTGCCGCGCCGGCGGCACCCGCGACGTCGTGCTGATCCCGGCCGACCAGGTCGACTACATGGACGTGTC GCCGAAGCAGCTCGTTTCGGTCGCCGCGGCGCTGATCCCGTTCCTCGAGAACGACGACGCCAACCGCGCGCTGATGGGCT CGAACATGCAGCGCCAGGCGGTGCCGCTGGTTCGCGCCGAGGCGCCGTTCGTCGGCACCGGCATGGAAGGCGTGGTCGCC CGTGACTCGGGCGCGGCGATCGCCGCGCGCCGCACCGGCATCATCGACCAGATCGATGCCACCCGCGTCGTGATCCGCGC CACCGAGGATCTCGATCCGACCAAGTCGGGCGTCGATATCTACCGGCTGATGAAGTACCAGCGCTCCAACCAGTCGACCT GCATCAACCAGCGTCCGCTGGTGAAGGTCGGCGACCACGTCAAGAAGGGCGACATCATCGCCGACGGTCCGTCGACCGAT CTCGGCGAGCTGGCGCTGGGCCGCAACGTGCTGGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCGATCCT GCTCTCCGAGCGGATCGTGAAGGAAGACGTCTTCACCTCGATTCACATCGAGGAATTCGAGGTGATGGCGCGTGACACCA AGCTCGGCCCCGAAGAAGTCACCCGCGACATTCCGAACGTCTCGGAAGAAGCGCTGAAGAACCTCGACGAAGCCGGTATC GTCTACATCGGCGCCGAAGTTCGCGCCGGCGACATCCTGGTCGGCAAGATCACGCCGAAGGGCGAAAGCCCGATGACGCC GGAAGAAAAGCTGCTGCGCGCCATCTTCGGCGAAAAGGCCTCGGACGTTCGCGACACCAGCTTGCGGGTGCCGCCGGGCG TGCAGGGCACCATCGTCGAAGTCCGCGTGTTCAACCGCCACGGCGTCGACAAGGACGAACGTGCGCTGGCGATCGAGCGG GAAGAGATCGAACGGCTCGCCAAGGACCGCGACGACGAGCAGGCGATTCTCGACCGTAACGTCTACGGCCGTCTCGCCGA CCTGCTCGACGGCCGCCAGGGCATCGCCGGACCGAAGGGCTTCAAGAAGGACACCAAGATCACCCGCGCGGTGCTCGAGG AATATCCGAAGTCGCAGTGGTGGCTGTTCGCGGCGCCGAACGACAAGCTGATGGCCGAAATCGAGGCCATGCGGAAGCAG TACGACGAGTCGAAGAAGGGCCTCGAACAGCGCTTCCTCGACAAGGTCGAGAAGCTTCAGCGCGGCGACGAACTGCCGCC CGGCGTGATGAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGATCCAGCCGGGCGACAAGATGGCCGGCCGCCACG GCAACAAGGGCGTGGTGTCGAAGATCGTGCCGATCGAGGACATGCCGTTCCTGGAGGACGGTACCCACGCCGACATCGTG CTCAACCCGCTCGGCGTGCCGAGCCGCATGAACGTCGGTCAGATCCTCGAGACGCATCTCGGCTGGGCGTGCGCGGGCCT CGGCAAGCGCATCGGCCAGACCATCGACACCTACTACCAGAGCCAGGATCTCAAGCCGCTGCGCGAGACCCTGCGGAAGA TCTACGGCGAGGACGAGACCATCAAGTCGCTCGACGATGGCGAGCTGCTCGAGCTCGGCCGCAATCTGCGCCATGGCGTG CCGATCGCGACCCCGGTGTTCGACGGCGCCAAGGAAGCCGACATCGAGGAGATGCTGAAGCTCGCGGGCTTCGATGCCTC GGGGCAGTCGACCGTCTACGACGGCCGCACCGGCGATCAGTTCGATCGCCGCGTCACCGTCGGCTACATCTACATGCTGA AGCTGCATCACCTCGTGGACGACAAGATCCACGCCCGGTCGATCGGTCCGTACTCGCTCGTCACCCAGCAGCCGCTGGGC GGCAAGGCGCAGTTCGGCGGCCAGCGCTTCGGCGAAATGGAGGTGTGGGCGCTCGAGGCTTACGGCGCGGCCTATACGCT GCAGGAAATGCTGACGGTGAAGTCGGACGACGTCGCCGGCCGCACCAAGGTGTACGAGGCGATCGTGCGCGGCGACGACA CGTTCGAGGCCGGTATCCCGGAATCGTTCAACGTGCTCGTCAAGGAAATGCGCTCGCTCGGCCTCAACGTCGACCTGCAC AATTCCAAGCTGGGCAACACGCCCCCGGCCGAGGCGGCCGAATGA Protein sequence : MAQQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVAEPPGGRPDEGLQAVFRSVFPISDFSNASMLEFVRYEF EPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGARSVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSP GVFFDHDKGKTHSSGKLLFAARIIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLMFALGLDGEEILSTFYNKILYKRT KDGWRVPFDVNRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMSDEELVGNYLAEDLVNPKTGEIYA EAGEEITDKALKMLNEQGYKELPLLDIDHVNVGPYIRNTLNVDKNMTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFD AERYDLSAVGRVKMNMRLDLDAPDTHRTLRKEDILAVIKTLVGLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRM ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVH PTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPYRRVKDGHVTDEVVYLSAMEEGRYAVAQANVPLDAKGRFTD DLIVCRAGGTRDVVLIPADQVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA RDSGAAIAARRTGIIDQIDATRVVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPLVKVGDHVKKGDIIADGPSTD LGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFTSIHIEEFEVMARDTKLGPEEVTRDIPNVSEEALKNLDEAGI VYIGAEVRAGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIER EEIERLAKDRDDEQAILDRNVYGRLADLLDGRQGIAGPKGFKKDTKITRAVLEEYPKSQWWLFAAPNDKLMAEIEAMRKQ YDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIV LNPLGVPSRMNVGQILETHLGWACAGLGKRIGQTIDTYYQSQDLKPLRETLRKIYGEDETIKSLDDGELLELGRNLRHGV PIATPVFDGAKEADIEEMLKLAGFDASGQSTVYDGRTGDQFDRRVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLG GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLH NSKLGNTPPAEAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 60 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 57 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 50 |
| Rpdx1_2165 | YP_004108494.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 49 |
