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Name : Selin_1943 (Selin_1943) Accession : YP_004113226.1 Strain : Desulfurispirillum indicum S5 Genome accession: NC_014836 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 2133066 - 2137109 bp Length : 4044 bp Strand : - Note : KEGG: gsu:GSU2863 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA p DNA sequence : ATGGCGTTTGCTCAACAGCAAAATCGCAAAGTGACCTTTCGGAAACGGCACAACTTTTCCCGTATCCCCAATATTCTGGA TATACCGGATCTGAATGCCATTCAAAAAGAATCATATGTAAAATTTCTTCAAATGGGCAAGGATTTCCAGCAGCGCAGTG ACATGGGTCTCGAGGCGGTCTTTCGCAGCGTGTTCCCTATTCAGGACTACAATGAAACCGCCCAGTTGGAATATATCAGC TACTCCCTGGGAGAGCCGAAATATAATGTCAATGAGTGTCAGGATCGTGGTGCCACCTTCGCGGCTCCTGTCAGGATCAA GGTCCGCCTGGTACTCTTTGAGCGGGAAGGGTCAGCTGCGCCCGGCGAGCGTCCGGTCAAGGATGTCAAGGAGCAGGAAG TCTATCTGGGAGAACTCCCCCTGATGACCGACAAGGGGACCTTTATTATCAACGGCATTGAGCGGGTTATTGTCAGCCAG CTTCACCGTTCACCTGGTGTCTTTTTTGAAGACGATGGTGGCAAGGGCGGTGCCAATGCCAAGGTGATCTACTCTGCGCG TATCATACCCTATCGTGGCTCCTGGATGGATTTTGAATTTGATGCCAAGGATATCCTCTATGTCCGCATCGACAAGAAAC GCAAGTTTCCGGCCACGGTTGTGCTCAAGGCACTGGGGTACAGCGAACGCGATATTCTCAGCCACTTCTACACCAATGAA ACCATCCGCGTCAGTGAGGATGGTTCGGTTGAGAAACTGACCGACCTGGCAAATCTTTATAATCAGAAACTGATGCAGGA TATCCTTCACCCTGAAAGTGGTGAGGTGCTGGTAAAGGCTGGACACAAGATAACCCGCGGCAATATTCGTAAGCTCACCA ACGCCAATGTGCAGAGTATCCGGCTCGATCGCATGGAGGTAGTGCGTGACACGTCCTACTTCGCCGAAGATATTTACGAT CCCTCCAGTGGCGAACTGCTTGCCTCCATTAACCAGCCTGTCACCGATGATATCTACGACCTGCTGCTTGAACGAGGGGT GCGCGAATTCGCCATTCTCTTTATCGACAATATCAAAAGTGATACCTCCATACGCGACACCCTGGCGGCTGACAGCAAGG TGACTTCGGCGGAAGAAGCTCTTATCGAGATATTCCGCAAGATGCGTCCAGGTGAGCCTCCCACGGTAGAAGCGGCTACA CAGCTGTTTGACAACCTGTTCTTTGTCGCCAAGCGGTATGATCTCAGCCGCGTCGGGCGTCTGAAAATCAACCGTCGCCT CGGTCTTGAAGTTCCCATGGATGTCACTACCCTGACCCGTGAGGATATTCTGCAGGTCGTCAAGACCCTCTCCGATATCA AGAACGGAAAAGGTTCCGTCGACGATATCGACCACCTCAGCAACCGACGCATCCGCAGCGTGGGCGAGCTGCTGGAAAAC CAGTTCCGCATCGGCCTGGTCCGCATGGAGCGCACGGTGAAGGAGCGCATGAGCATTCAGGATCTTTCGGAGCTTTCGCC CCAGGAACTCCTGAACTCCAAGCCCATCGTGGCTTCCATTAAGGAATTTTTCGGTTCTTCCCAGCTCAGTCAGTTTATGG ATCAGACAAATCCCCTGGCCGAAATCACGCACAAGCGCCGGCTCTCGGCCCTTGGTCCTGGTGGTCTGACCCGTGAGCGG GCGGGTTTTGAGGTGCGTGACGTTCACACCACGCACTATGGACGTATCTGCCCCATCGAAACTCCGGAAGGCCCGAACAT CGGTCTGATAACCTCTTTGGCAACCCATGGACGTATCAACGAGTATGGGTTTATCGAAACGCCTTACCGGAAGGTTGAGA AGAAAAAGGTAACCACGCAGATCGATTATCTCAGCGCCATTGACGAGTATGGTCAGATCATCGCCCAGGCCAACGAGCCC CTCGACAAGGGCAACTGCTTTGTCAACGAGCTGGTTTCCGCCCGTGATGAGGGTGAATTCGTTATGACCGAAGCGGAGAA TATCACTTACATGGACGTTGCACCGGTACAGATGGTGTCTGTGGCCGCCGGCCTGATTCCCTTCCTGGAGAACGATGACG CCAACCGCGCTCTGATGGGATCAAACATGCAGCGTCAGGCAGTTCCCCTGCTGCGCACCCAGTCGCCTCTGGTCGGAACC GGCCTTGAGCGCAAGGTGGCTGTTGACAGCGGCGCTGCCATAACGGCTACCCGTGGCGGTACCATTGTCAGCGTTGAAGC GGACAAGATCATTGTCCACGTCAATGAGAGCGAAATCGCTCCCGGCGAAGGTCGCGTTGATATCTACAACCTCATCAAGT TCCGACGCTCCAACCAGAATACCTGCATCAACCAGACGCCCATCGTATTCCCGGGCGATCAGGTCAAGGCGGGCGATGTC ATCGCCGATGGTCCGGCCACCGAGTCTGGTGATCTGGCCCTTGGCAAGAACGTGGTTGTCGCCTTCATGCCTTGGATGGG CTACAACTTCGAGGACTCCATCCTCATCTCCGAACGCGTGGTGCTGGAAGATGTCTATACTTCCATTCATATCGAGGAAT TTGACGTGGAAGCCCGTGACACCAAACTGGGTCCGGAAGATATCACCCGCGATATTCCCAACGTGGGTGAGGACGCCCTC AAGGATATCGATGACTCCGGTATCATCCGCATAGGCGCGGAAGTGAAAGCCGGCGATATCATGGTGGGGAAAGTGACTCC CAAGGGGGAGACGCAGCCAACACCTGAAGAAAAGCTCCTGCGGGCGATCTTCGGCGAGAAGGCCGGTGAGTTCCGCGACG CATCCCTGACCGTACCCCCCGGTATTGAGGGGACCATCGTCGACGTGAAGGTCTTCACCCGTCGCGGTACGGAAAAAGAC GACCGCGTCAAGGATATCGAGGAAGAAGAAATCAAGAAGCTGGAAGTCGACTATCAGGATGAGTGCACCCTTATCCGCAA GGAGCGCCTCAACAAGATACGTCGCCTGCTGGTCGGCAAAAAGCTCGCAGACGACCTGGTGCTGCGTGGCAAGATACTTG GACGCGAAGGGGAAGCCATCACCATGGAAATGGTGGAAAAGCTCACCCTCAACGAACTGCTGGAAACCCCCGTTGAAGAC AGCGAAGGATTTATCCGCAAGGCCGAGTCCATCCGTGAAATTATGGAAGAGCAGCTGGAAAAAACCCACGAGATGTACAC GGAGAAAAAATCCCGTGTCAACATGGGCGACGATCTGCCTCCCGGGGTCTTTAAAATGGTCAAGGTCTATGTTGCCGTCA AGCGTAAGCTGAAAGTCGGCGACAAGATGGCCGGGCGCCACGGCAACAAGGGTGTTGTTTCCCGCATCCTGCCCCAGGAA GACTTGCCCTATCTGCCAGACGGAACCCCCGTTGACATCGTGCTCAACCCCCTGGGCGTTCCCTCCCGTATGAACGTGGG GCAGATTCTTGAAACCCACCTGGGCTGGGCCGCCAAGGCCCTGGGTATGCACGTTGCCACCAACGTGTTCGATGGCGCCA ATGAAGGCGATATCAAGGAACTCCTGCGCAAGGCCTATGATGGCAATGACACCGGTCAGACCGATCTCTACGACGGACGT ACCGGCGAGAAATTTGACCAGCCGGTGACCGTGGGCGTCATCTACATGCTGAAGCTGCACCACCTGGTTGACACCAAAAT TCACGCCCGCAGCACAGGGCCGTACTCGCTGGTTACCCAGCAGCCCCTGGGCGGTAAGGCGCAGTTCGGCGGACAGCGAT TCGGGGAAATGGAAGTCTGGGCCCTTGAGGCCTATGGAGCCTCCCACTGTCTGCAGGAGCTGCTCACCGTGAAGTCGGAT GATGTCAACGGACGTACCAAGATGTACGAGGCTATCGTCAAAGGGGAAAACACCCTGACACCTGGCCTGCCTGAGTCCTT TAACGTACTGGTGAAGGAACTGCAGTCTCTGTGCCTTGATGTGGAGCTTATCTCCACGGACGAGGCGGTGGAAGTTGAAG CCGGCGAAAGCAGTGAAGTGCTGACGGAAGAGTCAGGCGAGTAA Protein sequence : MAFAQQQNRKVTFRKRHNFSRIPNILDIPDLNAIQKESYVKFLQMGKDFQQRSDMGLEAVFRSVFPIQDYNETAQLEYIS YSLGEPKYNVNECQDRGATFAAPVRIKVRLVLFEREGSAAPGERPVKDVKEQEVYLGELPLMTDKGTFIINGIERVIVSQ LHRSPGVFFEDDGGKGGANAKVIYSARIIPYRGSWMDFEFDAKDILYVRIDKKRKFPATVVLKALGYSERDILSHFYTNE TIRVSEDGSVEKLTDLANLYNQKLMQDILHPESGEVLVKAGHKITRGNIRKLTNANVQSIRLDRMEVVRDTSYFAEDIYD PSSGELLASINQPVTDDIYDLLLERGVREFAILFIDNIKSDTSIRDTLAADSKVTSAEEALIEIFRKMRPGEPPTVEAAT QLFDNLFFVAKRYDLSRVGRLKINRRLGLEVPMDVTTLTREDILQVVKTLSDIKNGKGSVDDIDHLSNRRIRSVGELLEN QFRIGLVRMERTVKERMSIQDLSELSPQELLNSKPIVASIKEFFGSSQLSQFMDQTNPLAEITHKRRLSALGPGGLTRER AGFEVRDVHTTHYGRICPIETPEGPNIGLITSLATHGRINEYGFIETPYRKVEKKKVTTQIDYLSAIDEYGQIIAQANEP LDKGNCFVNELVSARDEGEFVMTEAENITYMDVAPVQMVSVAAGLIPFLENDDANRALMGSNMQRQAVPLLRTQSPLVGT GLERKVAVDSGAAITATRGGTIVSVEADKIIVHVNESEIAPGEGRVDIYNLIKFRRSNQNTCINQTPIVFPGDQVKAGDV IADGPATESGDLALGKNVVVAFMPWMGYNFEDSILISERVVLEDVYTSIHIEEFDVEARDTKLGPEDITRDIPNVGEDAL KDIDDSGIIRIGAEVKAGDIMVGKVTPKGETQPTPEEKLLRAIFGEKAGEFRDASLTVPPGIEGTIVDVKVFTRRGTEKD DRVKDIEEEEIKKLEVDYQDECTLIRKERLNKIRRLLVGKKLADDLVLRGKILGREGEAITMEMVEKLTLNELLETPVED SEGFIRKAESIREIMEEQLEKTHEMYTEKKSRVNMGDDLPPGVFKMVKVYVAVKRKLKVGDKMAGRHGNKGVVSRILPQE DLPYLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKALGMHVATNVFDGANEGDIKELLRKAYDGNDTGQTDLYDGR TGEKFDQPVTVGVIYMLKLHHLVDTKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASHCLQELLTVKSD DVNGRTKMYEAIVKGENTLTPGLPESFNVLVKELQSLCLDVELISTDEAVEVEAGESSEVLTEESGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 55 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 56 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 55 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 55 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 55 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 55 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 55 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 54 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 54 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 53 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 53 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 53 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 53 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 53 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 53 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 52 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 52 |
| Selin_1943 | YP_004113226.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 52 |
