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Name : Pat9b_0913 (Pat9b_0913) Accession : YP_004114793.1 Strain : Pantoea sp. At-9b Genome accession: NC_014837 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1046589 - 1048436 bp Length : 1848 bp Strand : + Note : KEGG: eta:ETA_25370 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein DNA sequence : GTGTTAAACCGTTATCCTTTGTGGAAGTACATCATGCTGGTCGTCGTTATTCTCGTCGGCCTGCTCTATGCGCTTCCCAA CCTTTATGGTGAGGATCCGGCCGTTCAAATCACTGGTGCGCGCGGTGGCGCCGCCAGTGAGCAAACGTTGGATCAGATCC AGACTGCATTACAAAAAGATAATATCCAGAGCAAATCCCTCGTTCTGGAAAATGGCGCGGTTCTTGCGCGCTTTGCGAAT ACGGATGTGCAGTTGCGCGCCCGTGAAGCGATTACCAATGTTCTTGGCGAGAACTACGTTGTAGCACTCAACCTGGCACC GGCTACGCCGCGTTGGTTGAGCCTGCTGGCCGCAGAGCCGATGAAACTCGGTCTTGACCTGCGTGGCGGCGTACACTTCC TGATGGAAGTGGACATGGATACCGCACTGAGCAAACTGCAGGAGCAGAATGCCGACGGCCTGCGCAGCGACCTGCGCGAT AAAGGCATCCCTTACGTTAACGTCAATAAAATCGCTAACTACGGCGTGGAAATTCGTTTCCGTGACGGCACCAGCCGTGA TGCGGCCATCAGCTATCTGTCTTCACGTCATCAGGATCTGGTGATTTCCAGCCAGGGCAGCGATACCCTGCGTGCGGTGA TGACCGATGCGCGCCTGAGTGAAGCGCGTGAATATGCTGTGCAGCAGAACATCAATATCCTGCGTAACCGTGTTAACCAG CTTGGCGTTGCTGAACCGCTGGTACAGCGTCAGGGTTCTGACCGCATCGTGGTTGAGTTGCCGGGTATTCAGGATACCGC GCGTGCCAAAGAGATTCTGGGTGCGACTGCAACCCTCGAATTCCGTCTGGTGAACACCACGGTTGACCCGAGCGCTGCGG CCAGTGGCCGTGTACCGGGTGATTCTGAAGTCAAAATGACGCGTGAAGGCCAGCCTGTTGTGCTGTACAAACGTGTGATT CTGACCGGTGACCATATCACCGACTCCACGTCCAGCATGGATGAGTACAACCAGCCGCAGGTGAATATTTCACTGGATGG CGCGGGCGGTAACATCATGTCGAACTTCACCAAGGACAATATCGGTAAACCGATGGCGACCCTGTTTGTGGAGTACAAGG ACAGCGGTAAGAAAGATGCCAATGGCCGTGCGATTCTGGTGAAACAGGAAGAAGTGATTAACGTGGCGAACATTCAGTCG CGCCTCGGCAACAGCTTCCGTATTACCGGTATCAGCAATCCGAACGAAGCCCGTCAGCTGTCGCTGCTGCTGCGTGCCGG TGCGTTGATTGCGCCCATTCAGATTGTGGAAGAGCGTACTATCGGCCCAACCATGGGTCAGCAGAACATCACACAGGGTC TCGAAGCCTGTCTGTGGGGTCTGATCGCGTCCATCATCTTTATGGTGGTGTTCTATAAGAAATTCGGTCTGATCGCCACC AGCGCACTGCTGTGCAACCTGGTGTTGATCGTCGGCATCATGTCACTGCTGCCAGGTGCGACACTCACCATGCCGGGTAT TGCCGGTATCGTGTTGACGCTGGCGGTAGCGGTGGATGCGAACGTACTGATTAACGAACGTATTAAAGAAGAGTTGCGTA ACGGTCGTTCCGTGCAGCAGGCGATTCATGAAGGCTACAAAGGTGCCTTCTCCAGTATCGTCGATGCTAACGTCACGACG CTGATTAAAGTCATCATTCTTTATGCGGTCGGTACCGGTTCAATCAAAGGTTTTGCGATTACCACGGCTATCGGTATCGC GACCTCCATGTTTACCGCTATCGTCGGCACCCGTGCCATCGTTAACCTGGTGTACGGCGGCAAACGCATCAACAAGCTGT CTATCTAA Protein sequence : MLNRYPLWKYIMLVVVILVGLLYALPNLYGEDPAVQITGARGGAASEQTLDQIQTALQKDNIQSKSLVLENGAVLARFAN TDVQLRAREAITNVLGENYVVALNLAPATPRWLSLLAAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADGLRSDLRD KGIPYVNVNKIANYGVEIRFRDGTSRDAAISYLSSRHQDLVISSQGSDTLRAVMTDARLSEAREYAVQQNINILRNRVNQ LGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTTVDPSAAASGRVPGDSEVKMTREGQPVVLYKRVI LTGDHITDSTSSMDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEEVINVANIQS RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEACLWGLIASIIFMVVFYKKFGLIAT SALLCNLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTT LIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLVYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-124 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 8e-125 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 7e-125 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 7e-125 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 7e-125 | 48 |
