|
Name : HICON_09040 (HICON_09040) Accession : YP_004138052.1 Strain : Haemophilus influenzae F3047 Genome accession: NC_014922 Putative virulence/resistance : Unknown Product : RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 691340 - 695368 bp Length : 4029 bp Strand : + Note : - DNA sequence : ATGGGTTACTCCTATTCTGAAAAAAAACGAATTCGTAAAGATTTCGGTAAACGTCCGCAAGTTTTAAATGTTCCTTATTT ATTAACCATTCAGTTGGATTCTTTTGATAAATTTATTCAAAAAGATCCTGAAGGTCAGCAAGGTTTAGAAGCGGCATTCC GTTCTGTATTCCCTATTGTCAGTAATAATGGCTATACAGAATTACAATATGTAGATTATCGTTTAGAAGAGCCAGAGTTT GATGTACGTGAGTGCCAAATTCGTGGCTCAACTTATGCAGCAGGCTTACGTGTAAAATTACGTTTAGTGAGCTACGATAA AGAATCTTCTTCACGCGCAGTTAAAGATATTAAAGAAAATGAAGTTTATATGGGGGAAATCCCATTAATGACGGATAACG GTACTTTTGTAATTAATGGTACCGAGCGTGTTATCGTTTCACAATTACACCGTAGTCCAGGTGTATTCTTTGATTCTGAC AAAGGTAAAACCCATTCTTCAGGTAAAGTGCTTTATAACGCACGCATTATTCCTTACCGTGGTTCTTGGTTAGATTTTGA ATTCGATCCAAAAGATAACTTATTTGCGCGCATTGACCGTCGTCGTAAATTACCGGCAACAATCATTCTTCGTGCATTAG GCTACACCACTGAAGAAATCTTAAACTTATTCTTTGATAAAATTACCTTTGAAATCGCTGGCGATAAATTGTTAATGACT TTAGTGCCAGAACGTTTACGTGGTGAAACGGCTTCTTTTGATATTGAAGCAAATGGCAAAGTGTATGTTGAACGTGGTCG TCGCATCACTGCTCGTCACATTAAAGCATTAGAAAAGGATAATATCTCACAAGTAGTTGTGCCTTCTGAATATATTTTAG GTAAAGTTGCGTCGAAAGATTATGTTGATTTAGAGTCTGGCGAAATTATTTGTCCTGCAAATGGCGAAATTTCGTTAGAA ACCCTCGCAAAATTAGCACAAGCTGGTTACACCACGATCGAAACTTTATTTACTAATGATTTAGATTATGGTCCATATAT TTCTGAAACGCTACGTGTCGATCCAACTTATGACAAAACTAGTGCGCTTTACGAAATTTATCGTATGATGCGTCCGGGCG AGCCACCAACACCAGAATCTTCAGAAGTGTTATTCAATAATTTATTCTTCTCTGCAGAACGTTATGATTTATCTACAGTA GGTCGTATGAAGTTCAACCGTTCTTTAGCTTTTCCAGAAGGGGAAGGTGCGGGTATTTTAAGCAATGAAGATATTATTGC GGTAATGCGTAAATTGATCGACATCCGTAATGGTCGTGGCGAAGTAGACGATATTGACCATTTGGGTAACCGTCGTATCC GTAGCGTGGGCGAAATGGCTGAAAACCAATTCCGTATCGGTTTAGTGCGTGTTGAAAGAGCGGTCAAAGAACGTCTATCT TTAGGCGATTTAGATGCGATCACGCCACAAGACTTAATTAACCCGAAACCGATTTCTGCGGCAGTAAAAGAATTCTTTGG TTCTTCACAGCTTTCGCAATTTATGGATCAAAACAACCCATTGTCAGAAGTGACACACAAACGTCGTATTTCTGCATTAG GTCCAGGCGGTTTAACGCGTGAGCGTGCAGGCTTTGAAGTGCGTGACGTACATAATACTCACTATGGTCGTTTATGTCCG ATTGAAACCCCTGAAGGTCCAAACATCGGTTTGATCAACTCACTTTCTGCTTTTGCACGTACTAATGATTATGGTTTCTT AGAAACACCATATCGTAAAGTGGTTGATGGTCAAGTTACTGAAGAAATTGAATACTTATCTGTAATTGATGAAGCAAACT ACATCATTGCACAGGCAAACTCAAACTTAGACGAAAATAACCGTTTTACTGATGCTTTCGTTACTGCTCGTGGTGAACGT GGTGAATCTGGTTTATATAAACCTGAAGATATTCACTATATGGATGTTTCGACACAACAAGTGGTATCTGTTGCGGCTGC ATTAATTCCATTCCTTGAGCATGACGATGCGAACCGTGCGTTGATGGGTGCGAACATGCAACGTCAAGCAGTTCCAACAT TACGTGCGGATAAACCATTAGTTGGTACAGGTATGGAAAAACCAATCGCACTTGACTCAGGTGTTGCGGTTGTTGCAAAA CGTGGTGGTACCGTTCAGTACGTTGATGCGTCTCGTATTGTGATTAAAGTAAATGAAGATGAAACCATTGCAGGTGAAGC CGGTATTGATATTTATAACTTAATCAAATATACCCGTTCTAACCAAAATACTTGTATTAACCAAATTCCTTGTGTGAATT TAGGCGATCCAATCAATCGTGGTGAAGTATTAGCAGATGGTCCTTCAACTGATTTGGGGGAACTTGCATTAGGTCAAAAC ATTCGTGTGGCGTTTATGCCTTGGAATGGTTATAACTTTGAAGACTCAATGTTAGTTTCTGAACGTGTCGTTCAACAAGA CCGTTTTACTACAATCCATATTCAAGAATTATCTTGTGTAGCGCGTGATACTAAATTAGGTTCAGAAGAAATTACGGCAG ATATTCCAAACGTAGGGGAGTCAGCATTAAGTAAACTTGATGAATCTGGTATTGTTTATGTTGGTGCAGAGGTTAAAGGT GGCGATATCTTAGTGGGTAAAGTAACCCCTAAAGGCGAAACGCAATTAACCCCAGAAGAAAAATTGTTACGTGCAATCTT TGGTGAAAAAGCCTCTGATGTTAAAGATTCTTCATTACGCGTGCCAAATGGTACATCAGGTACGGTTATTGATGTTCAAG TCTTTACTCGTGATGGTGTAGAAAAAGATAAACGTGCATTAGAAATTGAAGAAATGCAACTTCGTGAAGCGAAAAAAGAT TTAACTGAAGAGTTAGAGATTTTAGAAGCTGGCTTATTTGCTCGTGTTCGTCATCTTCTTATTTCTAGTGGTGCTGATGC AGCGCAATTAGACAACCTAGATCGCGCTAAATGGTTAGAACAAACCATTGCAGATGAAGAAAAACAAAATCAATTAGAAC AGCTTGCTGAGCAATACGAAGAACTTCGTAAAGAGTTTGAACATAAACTTGAAGTGAAACGCAAGAAAATCATCAAAGGT GATGACCTTGCACCAGGCGTATTAAAAGTGGTGAAAGTTTACCTTGCGGTGAAACGTCAGATCCAGCCGGGTGATAAAAT GGCGGGTCGTCACGGTAACAAAGGTGTTATCTCAAAAATTAACCCAGTTGAAGATATGCCATACGATGAAAATGGTCAGC CGGTTGAAATCGTATTGAACCCACTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTTGAAACTCACTTAGGTTTA GCAGCGAAAGGTATTGGTGATCAAATCAATGCAATGCTTAAACAAAAACAAGAAGTGGAAAAATTACGTGGTTATATCCA AAAAGCGTATGATTTAGGTAATGGCTCACAAAAAGTGGATTTAAGCACTTTCACTGATGAAGAAGTGTTACGTTTAGCAG AAAACCTACGTAAAGGTTTACCCGTTGCAACTCCAGTGTTTGACGGTGCGGACGAAGCGGAAATAAAAGAGTTATTAAAA CTTGGTGGATTACCAACTTCAGGTCAAATTACCCTTTACGATGGTCGCACTGGTGAGAAATTTGAACGTCCAGTAACCGT GGGTTATATGTATATGCTCAAATTGAACCACTTAGTCGATGATAAAATGCACGCTCGCTCAACGGGTTCTTATAGCCTTG TTACACAACAACCATTGGGTGGTAAAGCGCAATTTGGTGGTCAGCGTTTCGGTGAGATGGAGGTATGGGCACTTGAAGCA TATGGTGCAGCTTACACCTTACAAGAAATGCTAACCGTGAAATCGGATGATGTGAATGGTCGTACGAAGATGTATAAAAA CATCGTAAGTGGCAATCAACATATGGATCCAGGTACACCAGAATCTTTCAACGTAATAATGAAAGAAATTCGCTCACTTG GTTTAAATATCGAGTTAGATGAAGAGTAA Protein sequence : MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKDPEGQQGLEAAFRSVFPIVSNNGYTELQYVDYRLEEPEF DVRECQIRGSTYAAGLRVKLRLVSYDKESSSRAVKDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAGDKLLMT LVPERLRGETASFDIEANGKVYVERGRRITARHIKALEKDNISQVVVPSEYILGKVASKDYVDLESGEIICPANGEISLE TLAKLAQAGYTTIETLFTNDLDYGPYISETLRVDPTYDKTSALYEIYRMMRPGEPPTPESSEVLFNNLFFSAERYDLSTV GRMKFNRSLAFPEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS LGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCP IETPEGPNIGLINSLSAFARTNDYGFLETPYRKVVDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGER GESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVVAK RGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGDPINRGEVLADGPSTDLGELALGQN IRVAFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKG GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEEMQLREAKKD LTEELEILEAGLFARVRHLLISSGADAAQLDNLDRAKWLEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKG DDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGL AAKGIGDQINAMLKQKQEVEKLRGYIQKAYDLGNGSQKVDLSTFTDEEVLRLAENLRKGLPVATPVFDGADEAEIKELLK LGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGNQHMDPGTPESFNVIMKEIRSLGLNIELDEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 84 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 84 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 84 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 84 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 84 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 83 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 70 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 68 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 65 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 63 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 47 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 46 |
| HICON_09040 | YP_004138052.1 | RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 45 |
