|
Name : Psesu_1869 (Psesu_1869) Accession : YP_004146942.1 Strain : Pseudoxanthomonas suwonensis 11-1 Genome accession: NC_014924 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2064588 - 2066429 bp Length : 1842 bp Strand : - Note : KEGG: xal:XALc_1928 probable SecD export membrane protein; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein DNA sequence : ATGCTCGAGTTTCCCCGCTGGAAATACCTCGTCATCCTCGTGGTGCTGGCGATCAGCGCGCTGTACGCGCTGCCCAACAT CTACCAGAACGACTACGCCGTGCAGATCACCGGCAGCCGCGGCGCCGCGCTTGACCAGGCACTGGCCGACCGCGTCTCCG CGCAGCTGTCCACCGCCGGCGTGACGCCGAAGTCGGTGGCCATCGAAGGCGACAACCTGATGGTCCGCCTCGACGACGCC GACGCCCAGACCCTGGCAGCCGACGCCCTGCGCGGCAGCCTGGGCGAGAACTACACCGTCGCCCTGAACCTGGCCTCCAC CGTGCCGGACTGGCTGGACCGCATCGGCGCCAAGCCGATGGTGCTGGGCCTGGACCTGCAGGGTGGCGTGCACTTCGTCC TCCAGGTCGACCAGAACGCCGCGCTGGAGAAGCGCGTGGACGCCTACGCCGAGGACGTGCGGGTGACCCTGCGCGACAAG CGCATCCGCTACACCGCGGTCGACCGCCGTCCCGACCACACCATCGTCGCCACCCTGGGCACGGGCACCGACCCGGAGCA GGCGCGCACGACCCTGGCCCAGGCGATGCCGGCGATGAACGTCGAGCTGCAGGGCAACCGCCTGGTGGTGCGCATCCCGG ATGCGGAGCTCAACCAGATCGCCGGTTCGGCGATCGAGCAGAACATCGCCACCCTGCGCAACCGCGTCAACGAGCTGGGC GTGGCCGAGCCGATCATCCAGCGCCAGGGCGAGGAGCGCATCGTCGTGCAGCTGCCCGGCGTGCAGGACACCGCCGAGGC CAAGCGCATGATCGGCGCGACCGCGACCCTCGAGTACCGCGCGGTGATCGAGGGCAATGCCATGGACGCCGTCTCCACCG GCCGCGTGCCGCCGGAGGCCAAGGTGTACTACCGCCGCGATGGCTCGCCGGTGCTGCTGAGCAAGCGCGTGATCGTCACC GGCGACCAGATGGTGGCCGCGCAGAGCTCGGTGGACCAGAACGGCCTGCCGGCGGTCAGCGTGACCCTGAACAACGTCGG CGGCGACCGCATGTTCGACTTCACCAGCGCCAGCGTCGGCAAGCCGATGGCAGTGGTGTACACCGAGCGCGTCCCGCAGG TGAAGGTCGTCAACGGCGAGGAAGTGCGCAGCTTCCGGGTCAAGGAGGAGGTGATCTCCGTGGCCAACATCAACGGCGTG TTCGGCAAGAACTTCCAGACCACCGGCCTGGAGAAGACCGAGGCCGACGACCTGGCCAAGCTGCTGCGCGCCGGTTCGCT GGCCGCGCCGATGGACTTCGTCGAGGAGAAGATCGTCGGCCCGAGCCTGGGCAAGGAGAACGTGCAGCGCGGCGTCACCG CGGTGCTGTACGCGTTCCTGTTCACCCTGGTGTTCTTCGCCGTGTACTACCGCATGTTCGGCGTTCTGACCGGCATCGCG CTGATGTTCAACCTGCTGATCGTGGTCGCGGTGATGTCGCTGTTCGGCGCCACCATGACCCTGCCGGGCTTCGCTGGCCT GGCGCTGTCGATCGGCCTGTCGGTGGACGCCAACGTGCTGATCAACGAGCGCATCCGCGAGGAACTGCGCGCCGGCGTGC CGCCGAAGGCGGCGATCGCCAACGGCTACGAGAAGGCGTCCGGCACCATCTTCGACGCCAACCTCACCGGCATCCTCGCC GGCGTGGCCCTGTACGCGTTCGGCACCGGCCCGCTGAAGGGCTTCGCCGTGACCATGGTGATCGGCATCTTCGCCTCCAT GTTCACCGCGATCACCGTGTCGCGCGCCCTGGCGGTGCTGCTGTATTCCCGCCGCAAGAAGCTCAAGTCCCTGGCCGTCT GA Protein sequence : MLEFPRWKYLVILVVLAISALYALPNIYQNDYAVQITGSRGAALDQALADRVSAQLSTAGVTPKSVAIEGDNLMVRLDDA DAQTLAADALRGSLGENYTVALNLASTVPDWLDRIGAKPMVLGLDLQGGVHFVLQVDQNAALEKRVDAYAEDVRVTLRDK RIRYTAVDRRPDHTIVATLGTGTDPEQARTTLAQAMPAMNVELQGNRLVVRIPDAELNQIAGSAIEQNIATLRNRVNELG VAEPIIQRQGEERIVVQLPGVQDTAEAKRMIGATATLEYRAVIEGNAMDAVSTGRVPPEAKVYYRRDGSPVLLSKRVIVT GDQMVAAQSSVDQNGLPAVSVTLNNVGGDRMFDFTSASVGKPMAVVYTERVPQVKVVNGEEVRSFRVKEEVISVANINGV FGKNFQTTGLEKTEADDLAKLLRAGSLAAPMDFVEEKIVGPSLGKENVQRGVTAVLYAFLFTLVFFAVYYRMFGVLTGIA LMFNLLIVVAVMSLFGATMTLPGFAGLALSIGLSVDANVLINERIREELRAGVPPKAAIANGYEKASGTIFDANLTGILA GVALYAFGTGPLKGFAVTMVIGIFASMFTAITVSRALAVLLYSRRKKLKSLAV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-105 | 45 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-105 | 45 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-105 | 45 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-105 | 45 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-105 | 45 |
