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Name : Psesu_2342 (Psesu_2342) Accession : YP_004147407.1 Strain : Pseudoxanthomonas suwonensis 11-1 Genome accession: NC_014924 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 2569149 - 2573339 bp Length : 4191 bp Strand : - Note : KEGG: sml:Smlt0898 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase subunit beta; RNA polymerase Rpb2 domain 2; DNA-directed RNA p DNA sequence : ATGACGACGTATTCGTTCACCGAGAAGAAGCGCATCCGCAAGGACTTCGGCAAGCAGCGCTCGATCCTCGAGGTGCCGTT CCTGCTGGCCATCCAGGTCGATTCCTACCGCGACTTCCTGCAGGCCGACACCGACTCCGCCAAGCGCCGCGACACCGGCC TGCATGCGGCGCTGAAGTCGGTGTTCCCGATTGCCAGCTACAGCGGCAACGCCGCCCTTGAGTACGTCGGCTACAAGCTC GGCGAGCCCGTGTTCGACGAGCGCGAGTGCCGCAACCGCGGCCTGTCCTACGGCGCCCCGCTGCGCGTGACCGTGCGCCT GGTGATCTACGACCGCGAGTCCTCGACCAAGGCGATCAAGTACGTCAAGGAGCAGGAGGTCTACCTCGGCGAGATCCCGC TGATGACCGAGCACGGCACGTTCATCGTGAACGGCACCGAGCGCGTCATCGTCTCGCAGCTGCACCGTTCGCCGGGCGTG TTCTTCGACCACGATCGCGGCAAGACCCACAGCTCGGGCAAGCTGCTGTACAGCGCCCGCATCATCCCCTACCGCGGCTC CTGGCTGGACTTCGAGTTCGACCCGAAGGACGCGCTGTACACCCGCATCGACCGTCGCCGCAAGCTGCCGGTGACGATCC TGCTGCGTGCGCTGGGCTACAACAACGAAGAGATGCTGCGCGCGTTCTTCGAGATCAACACCTTCCACATTGACCCGTCC GAGGGCGTGCAGCTGGAGCTGGTCCCGGAGCGCCTGCGCGGCGAGACCCTGGGCTTCGACCTGGCCGACGGCGAGAAGGT GATCGTCGAGGCCGGCAAGCGCATCACCGCGCGCCACGTGCGCCAGCTGGAGCAGTCGGGCATCACCGCCCTGGCCGTGC CGGACGAGTACCTGCTGGGCCGCATCCTGGCCCATGACGTGGTCGACGCCGCCACCGGCGAGCTGCTGGCCGCGGCCAAC GACGAGATCACCGACGAGCACCTGGCCGCCTTCCGCAAGGCCGGCGTGGCCAGCGTCGGCACCCTGTGGGTGAACGACCT CGACCGTGGGCCGTACCTGTCCAACACCCTGCGCATCGACCCGAGCCGCACCCAGCTGGAGGCCCTGGTCGAGATCTACC GGATGATGCGTCCGGGCGAGCCGCCGACCAAGGAGGCCGCGCAGAACCTGTTCCACAACCTGTTCTTCACCTTCGAGCGC TACGACCTGTCGGCCGTGGGCCGGATGAAGTTCAACCGCCGCGTCGGCCGCAAGGACGTGCTCGGCCCGGCCGTGCTGTT CGACCACAAGTACTTCTCCGAGCGCAACGACGAGGATTCCAAGGCGCTGGTCGCCGCCCAGGGCGAGACCTCCGACATCC TCGACGTGCTGCGCGTGCTGACCGAGATCCGCAATGGTCGCGGCGTGGTCGACGACATCGACCACCTGGGCAACCGCCGC GTGCGTTCGGTCGGCGAGATGGCCGAGAACGTGTTCCGCGTGGGCCTGGTCCGCGTCGAGCGCGCGGTCAAGGAGCGCCT GTCCATGGCCGAGTCCGAGGGCCTGACCCCGCAGGAGCTGATCAACGCCAAGCCGGTGGCCGCCGCGATCAAGGAGTTCT TCGGCTCCTCGCAGCTGTCGCAGTTCATGGACCAGAACAACCCGCTGTCGGAAGTCACCCACAAGCGTCGCGTCTCGGCA CTGGGCCCGGGTGGCCTGACCCGCGAGCGCGCCGGCTTCGAAGTGCGCGACGTGCACCCGACCCACTACGGTCGCGTCTG CACCATCGAGACCCCTGAAGGCCCGAACATCGGCCTGATCAACTCGCTGGCCGTGTTCGCCCGCACCAACCAGTACGGCT TCCTCGAGACGCCGTACCGCAAGGTCGTGGACGGCCGCATCACCGACCAGGTCGAGTACCTGTCGGCGATCGAGGAGAAC GAGTACGTCATCGCCCAGGTCAACGCCGCCCACGACAAGGAAGGCCGCCTGACCGAGGCCTTCGTGCCGGTCCGCCACCA GGGCGAGTCGCTGCTCAAGCCGCCGGGCGAGATCCACTACATGGACGTGTCGCCGATGCAGACCGTGTCGGTCGCCGCGG CGCTGGTCCCGTTCCTGGAGCACGACGACGCCAACCGCGCCCTGATGGGCGCGAACATGCAGCGCCAGGCCGTCCCGACC CTGCGTGCCCAGACCCCGCTGGTCGGCACCGGCATCGAGCGCGCCGTGGCGCGCGACTCGGGCGTCACCGTCAACGCCCG CCGCGGCGGCGAGGTGGTGCAGGTCGACGCGGGCCGCATCGTGGTCAAGGCCAACGAGGAGGAGATCTCCGGCGAGCACG ATGCCGGCGTCGACATCTACACCCTGACCAAGTACACCCGCTCCAACCAGAACACCTGCATCAACCAGCGCCCGCTGGTG CACGTGGGTGACGTGGTCGCGCGCGGCGACGTGCTGGCGGACGGTCCGTCCACCGACATCGGCGAGCTGGCCCTGGGCCA GAACATGCTGATCGCGTTCATGCCGTGGAACGGCTACAACTTCGAGGACTCGATCCTCCTGTCCGAGCGCGTGGTCCAGG AAGACCGCTACACCACGATCCACATCGAGGAGCTGACCTGCGTCGCCCGCGACACCAAGCTGGGCCCGGAGGAGATCACC GCCGACATCCCGAACGTCTCCGAGCAGGCGCTGAACCGCCTCGACGAGTCGGGCGTGGTGTACATCGGCGCCGAGGTCCG CGCCGGCGACATCCTGGTCGGCAAGGTCACGCCGAAGGGCGAGAGCCAGCTGACCCCGGAAGAGAAGCTGCTGCGCGCGA TCTTCGGCGAGAAGGCCTCCGACGTTAAGGACAGCTCGCTGCGCGTGCCCCCGGGCATGGACGGCACCGTCATCGACGTG CAGGTCTTCACCCGCGACGGCATCGAGAAGGACAAGCGCGCCAAGCAGATCGAGGAAAACGAGATCCGCCGCGTCAAGAA GGACTTCGACGACCAGTTCCGCATCCTGGAAGCGGCGATCTACGCACGCCTGCGCGGCCAGATCGTGGGCAAGGTCGCCA ACGGCGGCCCGGGCTTGAAGAAGGGCGATGCCATCACCGACGCCTACCTGGACGGCCTGAAGAAGGCCGACTGGTTCCTG CTGCGGATGAAGGACGAGGAGGCCTCCGACGCCATCGAGCGCGCGCAGAAGCAGATCGCCGCGCACGAGAAGGAGTTCGA GCGCCGCTTCGCCGACAAGCGCGGCAAGATCACCCAGGGCGACGACCTCGCCCCGGGCGTGCTGAAGATGGTCAAGGTCT TCCTGGCCGTGAAGCGCCGCATCCAGCCGGGCGACAAGATGGCCGGCCGCCACGGCAACAAGGGCGTCGTGTCCAACGTG GTCCCGGTCGAGGACATGCCGTACATGGCCGACGGCACCCCGGTTGACATCTGCCTCAACCCGCTGGGCGTGCCTTCGCG CATGAACATCGGCCAGATCCTCGAGGTGCACCTGGGCTGGGCCGCCAAGGGCCTGGGCAAGCGCATCCAGAAGATGCTGG ACGAGCAGCGTGCGGTCTCCGAGCTGCGCGAGTTCCTGGACAAGGTCTACAACCACGACAGCAGCCTGGTCGGCCAACGC GTGGACCTGTCGCAGTTCAGCGACGAGGAGCTGCTGGGCATGGCCCGCAACCTGACCGGTGGCGTGCCGATGGCGACCCC GGTGTTCGACGGTGCGTACGAGGACGAGATCCGGCAGATGCTGGAGCTGGCCTACCCGACCGACGACCCGGAGACGGTCC GCCTGGGCTTCAACGCCACCAAGACCCAGATGCAGCTGCACGACGGCCGCACCGGCGAGGCGTTCGACCGCAAGACCACG GTCGGCTACATGCACTACCTGAAGCTGAACCACCTGGTCGACGACAAGATGCACGCCCGTTCGACCGGTCCGTACTCGCT CGTCACCCAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGCTTCGGTGAGATGGAAGTCTGGGCGCTGGAAG CCTACGGCGCGGCCTACACCCTGCAGGAAATGCTGACGGTGAAGTCCGACGACGTGCAGGGCCGCAACCAGATGTACAAG AACATCGTCGACGGCAACCACGAGATGGTCGCGGGCATGCCGGAGTCCTTCAACGTGCTCGTGAAGGAAATCCGCTCGCT GGCCATCAACATGGAGTTGGAGGACGAGTAA Protein sequence : MTTYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYRDFLQADTDSAKRRDTGLHAALKSVFPIASYSGNAALEYVGYKL GEPVFDERECRNRGLSYGAPLRVTVRLVIYDRESSTKAIKYVKEQEVYLGEIPLMTEHGTFIVNGTERVIVSQLHRSPGV FFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDALYTRIDRRRKLPVTILLRALGYNNEEMLRAFFEINTFHIDPS EGVQLELVPERLRGETLGFDLADGEKVIVEAGKRITARHVRQLEQSGITALAVPDEYLLGRILAHDVVDAATGELLAAAN DEITDEHLAAFRKAGVASVGTLWVNDLDRGPYLSNTLRIDPSRTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFER YDLSAVGRMKFNRRVGRKDVLGPAVLFDHKYFSERNDEDSKALVAAQGETSDILDVLRVLTEIRNGRGVVDDIDHLGNRR VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSA LGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSLAVFARTNQYGFLETPYRKVVDGRITDQVEYLSAIEEN EYVIAQVNAAHDKEGRLTEAFVPVRHQGESLLKPPGEIHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT LRAQTPLVGTGIERAVARDSGVTVNARRGGEVVQVDAGRIVVKANEEEISGEHDAGVDIYTLTKYTRSNQNTCINQRPLV HVGDVVARGDVLADGPSTDIGELALGQNMLIAFMPWNGYNFEDSILLSERVVQEDRYTTIHIEELTCVARDTKLGPEEIT ADIPNVSEQALNRLDESGVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV QVFTRDGIEKDKRAKQIEENEIRRVKKDFDDQFRILEAAIYARLRGQIVGKVANGGPGLKKGDAITDAYLDGLKKADWFL LRMKDEEASDAIERAQKQIAAHEKEFERRFADKRGKITQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNV VPVEDMPYMADGTPVDICLNPLGVPSRMNIGQILEVHLGWAAKGLGKRIQKMLDEQRAVSELREFLDKVYNHDSSLVGQR VDLSQFSDEELLGMARNLTGGVPMATPVFDGAYEDEIRQMLELAYPTDDPETVRLGFNATKTQMQLHDGRTGEAFDRKTT VGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYK NIVDGNHEMVAGMPESFNVLVKEIRSLAINMELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 68 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 68 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 71 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 68 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 67 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 67 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 67 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 67 |
| Psesu_2342 | YP_004147407.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 66 |
