Gene Information

Name : Psesu_0572 (Psesu_0572)
Accession : YP_004145661.1
Strain : Pseudoxanthomonas suwonensis 11-1
Genome accession: NC_014924
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 632967 - 635552 bp
Length : 2586 bp
Strand : +
Note : TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: xal:XALc_0712 atp-dependent clp protease subunit protein; SMART: ATPase AAA

DNA sequence :
ATGCGGATGGACAAGCTCACCTCGCGTTTCCAGCAGGCGCTGGCCGACGCGCAGTCGCTGGCCGTTGGCCGCGACCACAA
CATGCTGGAACCGGTGCACGTGCTGGTCGCCCTGGTCGACCAGGCCGGCGGCAGCACCCGGCCCCTGCTTTCCCAGGCCG
GCGTCAACGTGCCGGTGCTGCGCGAGCGGCTGGGCGAGGCTCTGGAGAAGCTGCCCAAGGTCTCCGGCCAGGCCGGCAAC
CTGTCGGTCGGCAACGACCTCGGCCGCCTGCTCAACCTGACCGACAAGCTCGCCCAGCAGAGCGGCGACCAGTTCATCGC
CAGCGAGTGGTTCGTGCTGGCCGCCCTGGAAGACACCGGCGCCGTGGGCCAGGCGCTCAGGGCCGCCGGCGCCGACAAGG
CGCGCCTGCAGGCCGCCATCGAGAAGATCCGCGGAGGGGAGACCGTGCAGTCCGAGAACGCCGAGGACCAGCGCCAGGCG
CTGGAGAAGTACACCATCGACCTCACCGCGCGCGCCGAGTCCGGCAAGCTGGACCCGGTGATCGGCCGCGACGAGGAGAT
CCGCCGCACGATCCAGGTCCTGCAGCGCCGCACCAAGAACAACCCGGTGCTGATCGGCGAGCCGGGCGTGGGCAAGACCG
CGATCGTCGAAGGCCTGGCCCAGCGCATCGTCAAGGGCGAGGTGCCCGAGCAGCTCAAGGGCAAGCGCGTGCTGAGCCTG
GACATGGGCGCGCTGATCGCCGGTGCCAAGTTCCGTGGCGAATTCGAGGAGCGGCTGAAGGCCGTGCTCAACGACCTGGC
CAAGAACGAGGGCCAGATCATCCTGTTCATCGACGAGCTGCATACCATGGTCGGCGCCGGCAAGGCCGAGGGCGCCATGG
ACGCGGGCAACATGCTCAAGCCGGCGCTGGCGCGCGGCGAGCTGCACTGCATCGGCGCCACCACCCTGGACGAGTACCGC
CAGTACGTGGAGAAGGACGCCGCGCTGGAGCGCCGCTTCCAGAAGGTGTTCGTCGGCGAGCCCAGCGTCGAGGACACCAT
CGCCATCCTGCGCGGCCTCAAGGAGCGCTACGCGGTGCACCACGGCGTGGAGATCACCGACCCGGCGATCGTCGCCGCGG
CCACCCTGTCCAACCGCTACATCGCCGACCGCCAGCTGCCGGACAAGGCCATCGACCTGATGGACGAGGCCGCCTCGCGC
ATCCGCATGGAGATCGACTCCAAGCCGGAGGAGCTGGACCGGCTCGAGCGCCGCCTGGTCCAGCTCAAGATCCAGCGCGA
GATGCTGAAGAAGGAGAAGGACGACGCTTCGAAGCAGCGGCTGGCCGACCTCGAGGCCGACATCGAGAAGCTCGAGCGCG
AGTTCTCCGACCTCAACGAGGTGTGGAAGTCGGAGAAGGCCGCGCTGCAGGGCGCGACCAGGGTCAAGGAGCAGCTGGAG
CAGGCGCGGATCGAACTGGAAGCCGCGCAGCGCGCCCAGGACTACGCGCGCATGAGCGAGATCCAGTATGGCCGCATCCC
GGCGCTGGAAAAGCAGCTGGCCGCCGCCGCCGAGGCCGAGAAGAAGGACTTCAAGCTGGTCCAGGACAAGGTCACCGAGG
AGGAGATCGCCGAGGTGGTCAGCCGCTGGACCGGCATCCCGGTCAGCAAGATGCTCGAGGGCGAGCGCGACAAGCTGCTG
CGCATGGAGCAGCAGCTGCACAGGCGTGTGGTCGGCCAGGACGAGGCGATCCGCGCAGTCTCCGACGCGGTGCGCCGCTC
GCGTGCCGGCCTGTCCGATCCGAACCGCCCGATCGGCTCGTTCCTGTTCCTGGGCCCGACCGGCGTGGGCAAGACCGAGC
TGTGCAAGGGCCTGGCCGAATTCCTGTTCGACAGCGCCGAGGCCATGGTCCGCATCGACATGAGCGAGTTCATGGAGAAG
CACTCGGTGGCCCGCCTGATCGGCGCGCCTCCGGGCTACGTCGGCTACGAGGAGGGCGGCTACCTGACCGAGGCCGTGCG
TCGCCGGCCGTACTCGCTGATCCTGCTGGACGAGGTGGAGAAGGCGCATCCGGATGTATTCAACATCCTGCTGCAGGTGC
TGGACGACGGCCGCCTGACCGACGGCCAGGGCCGCACGGTGGACTTCCGCAACACCGTCATCGTGATGACCTCCAACCTG
GGCTCGCACCAGATCCAGGAGCTGTCCGGCGACGGTTCGCCCGAGGCCTACGTGCAGATGAAGGCGGCGGTGATGGGCGT
GGTGCAGGCGCATTTCCGCCCGGAATTCATCAACCGCCTGGACGAGATCGTCGTGTTCCATCCGCTGGACAAGGCGCAGA
TCACGTCCATCGCCCGGATCCAGCTGCACGGCCTGGAGAAGCGCCTGCACGAGCGCGGCCTCAAGCTGGACCTGTCGGAC
GCGGCCCTGGAGCTGCTGGGCAACGTCGGCTTCGACCCGGTGTACGGCGCCCGCCCGCTCAAGCGCGCGATCCAGGCCCA
GGTCGAGAACCCGCTGGCGCAGAAGATCCTGTCCGGCGAGTTCGCCAGCGGCGACACCATCAAGGTCGACGCCGAGGGCA
GCCACCTGGTGTTCGCACGGACGTGA

Protein sequence :
MRMDKLTSRFQQALADAQSLAVGRDHNMLEPVHVLVALVDQAGGSTRPLLSQAGVNVPVLRERLGEALEKLPKVSGQAGN
LSVGNDLGRLLNLTDKLAQQSGDQFIASEWFVLAALEDTGAVGQALRAAGADKARLQAAIEKIRGGETVQSENAEDQRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGEVPEQLKGKRVLSL
DMGALIAGAKFRGEFEERLKAVLNDLAKNEGQIILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR
QYVEKDAALERRFQKVFVGEPSVEDTIAILRGLKERYAVHHGVEITDPAIVAAATLSNRYIADRQLPDKAIDLMDEAASR
IRMEIDSKPEELDRLERRLVQLKIQREMLKKEKDDASKQRLADLEADIEKLEREFSDLNEVWKSEKAALQGATRVKEQLE
QARIELEAAQRAQDYARMSEIQYGRIPALEKQLAAAAEAEKKDFKLVQDKVTEEEIAEVVSRWTGIPVSKMLEGERDKLL
RMEQQLHRRVVGQDEAIRAVSDAVRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKGLAEFLFDSAEAMVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL
GSHQIQELSGDGSPEAYVQMKAAVMGVVQAHFRPEFINRLDEIVVFHPLDKAQITSIARIQLHGLEKRLHERGLKLDLSD
AALELLGNVGFDPVYGARPLKRAIQAQVENPLAQKILSGEFASGDTIKVDAEGSHLVFART

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 5e-105 41
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 4e-101 41
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 3e-101 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psesu_0572 YP_004145661.1 ATP-dependent chaperone ClpB VFG2076 Protein 2e-106 42