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Name : Varpa_0108 (Varpa_0108) Accession : YP_004152441.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : ECF subfamily RNA polymerase sigma-24 subunit Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 109965 - 110489 bp Length : 525 bp Strand : - Note : KEGG: ppf:Pput_0844 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein DNA sequence : ATGTCGTTCCCCGATACCCGCCTGCAGCCCCAGTTGGGCGATTTCTACCGCGCGCACCACGGCTGGCTGACCGCCTGGCT GCGCCGAAAGCTGGGCTGCGCGCACAGTGCCGCCGACGTGGCGCAAGACACCTTCGTGCGCGTGCTCGCCTCGCGCGAGA CGCTGCGCATGCTGGGCAGCATCGAGAAGCCCCGCGCCTTCCTCTGCACCACGGCCGGGCGATTGCTGATCGACCGCGCG CGGCGCCAGCGCATCGAGCAGGCCTACCTGGCCGAACTGGCGCTGGCGATGGAGGGGTGCGCCCATCCCTCGCCGAAGGA AACGCTGATGGCGATGCAGGCGCTGGCCCAGATCGCTGCCGCGCTCGACGGCCTGCAGCCCAAGCCGCGCGAAGCCTTCC TGCTGCACTACCTGGACGGCATGACGCATACGGCCATCGCAGAGAGCCTGGGCGTATCGGACCGCATGGTGCGCAAGTAC CTCGCGCTGGCGCTGCTGCATTGCCGCGTGGAGTTCGTCCAGTGA Protein sequence : MSFPDTRLQPQLGDFYRAHHGWLTAWLRRKLGCAHSAADVAQDTFVRVLASRETLRMLGSIEKPRAFLCTTAGRLLIDRA RRQRIEQAYLAELALAMEGCAHPSPKETLMAMQALAQIAAALDGLQPKPREAFLLHYLDGMTHTAIAESLGVSDRMVRKY LALALLHCRVEFVQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 7e-28 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_0108 | YP_004152441.1 | ECF subfamily RNA polymerase sigma-24 subunit | VFG1049 | Protein | 3e-28 | 49 |
