Gene Information

Name : Varpa_1291 (Varpa_1291)
Accession : YP_004153618.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1445940 - 1446617 bp
Length : 678 bp
Strand : +
Note : TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; KEGG: vap:Vapar_1211 lipoprotein releasing system, ATP-binding protein; SMART: AAA ATPase

DNA sequence : 
ATGAGTGAAGTTGTTCTGAAGGCGCGTGGTCTCACGAAGCGTTTTCACGAAGGTCGCATCGACCTGACGGTGCTGCACGG
CGTGGACCTCGACGTGCATGCCGGCGAAACGCTGGCGATCGTCGGCGCATCCGGTTCGGGCAAGAGCACGCTGCTGCACC
TGATGGGCGGGCTCGATTCGCCGACCGCAGGCAAGGTCGAACTGCTCGGCAAGGACATCGCGCATGCCGATGCGGCGGAG
CAGGGGCGGCTGCGCAACCAGCACCTTGGGTTCGTCTACCAGTTCCATCATTTGTTGCCCGAATTCAGCGCGCTGGACAA
CGTAGCGATGCCGCTGAAGATCCGCCGCGTGGAATCGTCGCAGGCGGCGGAGTCGGCTCGCAAGATTCTCACGAGCGTGG
GCCTGGGCGAGCGGGTGCAGCATCGCCCGGCCGAACTCTCGGGCGGCGAGCGCCAGCGTGTGGCGATTGCACGTGCGCTG
GTCACGCAACCCGCGTGCGTGCTGGCGGACGAGCCGACTGGCAATCTGGACCGCAGCACGGCCGACACGGTGTTCGATTT
GATGCTCGATCTGGCGCACCGCCATGGCACGGCGTTCGTGATGGTCACGCATGACCAGGAACTGGCGAAGCGTTGCGACC
GGGTGCTGCAACTGGTGGCGGGCCGCCTCGCGGGCTGA

Protein sequence : 
MSEVVLKARGLTKRFHEGRIDLTVLHGVDLDVHAGETLAIVGASGSGKSTLLHLMGGLDSPTAGKVELLGKDIAHADAAE
QGRLRNQHLGFVYQFHHLLPEFSALDNVAMPLKIRRVESSQAAESARKILTSVGLGERVQHRPAELSGGERQRVAIARAL
VTQPACVLADEPTGNLDRSTADTVFDLMLDLAHRHGTAFVMVTHDQELAKRCDRVLQLVAGRLAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-29 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_1291 YP_004153618.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 7e-39 45
Varpa_1291 YP_004153618.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 5e-35 44