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Name : Varpa_0228 (Varpa_0228) Accession : YP_004152561.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : C : Energy production and conversion COG ID : COG0247 EC number : - Position : 245421 - 246674 bp Length : 1254 bp Strand : + Note : PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: vap:Vapar_0224 glycolate oxidase iron-sulfur subunit DNA sequence : ATGCAAACCGAACTCGCCCCCGAATTCCGCGACACCGACGAAGGCCGCGAAGCCGAAGCCATCCTGCGCAAGTGCGTGCA CTGCGGCTTCTGCACCGCCACCTGCCCGACCTACCAACTGCTCGGCGACGAGCTCGACGGCCCGCGCGGACGCATCTACC TCATCAAGCAGGTGCTCGAAGGCAAGGCGCCGACGCGCAGCACGCAGCTGCACCTCGACCGGTGCCTGACCTGCCGCAAC TGCGAGAGCACCTGCCCGAGCGGCGTGCAATACGGCAACCTCGTGGACATCGGCCGCAAGATCGTCGACGAGAAGGTGCC GCGCCCGGCGATGGAATCGGCCAAGCGCTGGCTGCTGAAGGAAGGGCTGCCGTCGCCGCTGTTCGGCCCCGCGATGAAGC TCGCGCAGTCGGTGCGCGGCCTGTTGCCCGATGCGCTCAAGGCCAAGGTGCCGGCGAAGCAGGAAGCGGGCGCCTGGCCC ACCGCCACGCATGCGCGCAAGGTGCTGATGCTCGCGGGCTGCGTGCAGCCGTCGATGATGCCCAACATCAACAGCGCCAC CGCGCGCGTGCTCGATGCGGCCGGCATCCAGGTCGTGATCGCGAAGGAGGCCGGCTGCTGCGGCGCGGTGAAGTTCCACC TCAACGACCAGGAAGGCGGCAAGGCGCAGATGCGCGCCAACATCGATGCGTGGTGGCCAGAGGTCGAGCGCAATGAAGTG GAAGCCATCGTGATGAACGCGTCGGGCTGCGGCGTCACCGTGCGCGAGTACGGCCACCTGCTGCAGCACGATGCGGCCTA TGCGGCGAAGGCGGCGCGCATCAGCGAACTGACGCGCGACCTGAGCGAGCTGCTGCCCGATCTCTTGCCCGCGTTGAAGG CCCGCGTGCGCGCGCCCGAAGGCGTGGTCGCCTACCACCCGCCGTGCACGCTGCAGCACGGCCAGAAGCTGCGCGGCGGC GTCGAGACGCACCTGCGCGCACTCGGCTTCGACGTGCGCGTGGCCATGAACGAATCGCACCTGTGCTGCGGCTCAGCGGG CACGTATTCGGTGCTGCAGCCCGAGCTGGCCTACCCGCTGCGCGACCGCAAGCTGGGGCACCTGAAGCAGCTGCAGCCCA CCACCATTGCCTCGGCCAACATCGGCTGCATCACGCACCTGCAAAGCGGCAGCGGGGAGACGCCGGTGCGGCACTGGGTC GAGCTGCTGGATGCCGCACTGGATCGCCGGCCGGGCGCGCAGGGTAGGGCCTGA Protein sequence : MQTELAPEFRDTDEGREAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGKAPTRSTQLHLDRCLTCRN CESTCPSGVQYGNLVDIGRKIVDEKVPRPAMESAKRWLLKEGLPSPLFGPAMKLAQSVRGLLPDALKAKVPAKQEAGAWP TATHARKVLMLAGCVQPSMMPNINSATARVLDAAGIQVVIAKEAGCCGAVKFHLNDQEGGKAQMRANIDAWWPEVERNEV EAIVMNASGCGVTVREYGHLLQHDAAYAAKAARISELTRDLSELLPDLLPALKARVRAPEGVVAYHPPCTLQHGQKLRGG VETHLRALGFDVRVAMNESHLCCGSAGTYSVLQPELAYPLRDRKLGHLKQLQPTTIASANIGCITHLQSGSGETPVRHWV ELLDAALDRRPGAQGRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcF | CAE85243.1 | GlcF protein | Not tested | PAI V 536 | Protein | 6e-102 | 55 |
