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Name : Varpa_2660 (Varpa_2660) Accession : YP_004154970.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : integral membrane sensor signal transduction histidine kinase Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2205 EC number : - Position : 2874802 - 2876289 bp Length : 1488 bp Strand : + Note : KEGG: vap:Vapar_2987 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hist DNA sequence : ATGGCTTGGGCCACGCTTTCTCGCCGTCTCTCGATGGTGTTCGCTGTGCTGCTGCTGGCTTGCTACGGCGCATCGGCGTG GCTGCAGATGCGGTCGAGCGGGCTGCATGAACAAGAAGTGGTGCAGCGCCTTTCGGGCGGGCTGGCCGCGCATATTGCCG AGAACACCGAACTGATGCAGCCCGGCGGCCTCAACCAGGCCGCGGTGAAGGACCTGTTCGACAAGCTGATGGCCGTGAAC CCCAGCGTTGAGGTTTATCTGCTGGGCCTGGACGGCCGCATCGAGGCGCAGGCCGCGCCGCCCGGGCACATGAAGCGCGA GCGAGTGGCGCTGGAGCCGATCCGCAAGCTGCTCTCGGGCGCGCCGTTGCCCATCCTCGGCGACGACCCGCGCAGCGCCG ATGCGGCCAAGGTGTTCAGTGCCGCACCGCTGAAGATGGGCGGCCGCGATGCCGGCTACGTGTATGTGGTGCTGCAGGGC GAGGACTACGACGCGCTCGCGGCCAACGTCGCGACCGACAACGTGCTGCGCACCACGCTATGGTCGATGGCGCTGGTCGC GCTGCTCGGGCTGATCGCGGGACTGGCAGCCTTCAGGCTCATCACGCGGCCGCTGCGCGAACTCACGAAGGCGGTCAAGC GCTTCGAGACCGAGGGCATCGCTTCGCTCGAAAGTGAAACGCCCAAGCTGGAAAGGCTTTCGCACGGCACCGATGAAATC GCATTGCTGGGCCAGGCCTTCACGCAGATGACGCGCCGCATCGCCGAGCAATGGCGCGAGCTCACGCTTTCGGACCAGCA GCGCCGCGAACTTTTCGCCAACATCTCGCACGACCTGCGCACGCCGCTCACCTCGCTGCACGGCTATCTCGAAACGCTGC TGCTCAAGGCCGGCACGCTCAGCGACGAAGAGCGCCGGCGCTACCTGGAGATCGCGCTCGGTCAGAGTCGCAAGGTGGGC CGGCTCGCGCAGGAGGTGTTCGAACTCGCGCGGCTCGAATACGGCGTGGTCAAGCCCGAGAAGGAAAACTTCGCGCTCGC CGATCTCGTGCAGGACGTGTTCCAGAAGTTCGAGCTCGCGGCCGAGGCCCGGCACCAGCAGCTCAGGCCCGACATCGCGC CGGGCCTGCCGGTCGTGTCGGCCGATCTCGGGATGATCGAGCGCGTGCTGACCAACCTGCTGGACAACGCCATCCGCCAT ACGCCGGCCGGCGGCGAGATCGAAGTGCAACTGCGCCCAGCGAACGCCGGCGTGGCGGTGCAGGTGAGCGACACGGGCCC GGGCATTCCGGGCGAGCTGCAGAAGGGCCTCTTCGTGCGGCCCGTGTTCATGAGCGGTGCGCGCAGCGACGGCTCGGGCA GCGGCGGGCTGGGGCTGGTGATCGTGCAGCGCATCCTGCAACTGCACGGCAGCGACATCCGGCTGGTGCCGCAGGCGGGC AAGGGGGCGGTGTTCCGCTTTCAGTTGGGCGGTGCGGCGGGGGCCTGA Protein sequence : MAWATLSRRLSMVFAVLLLACYGASAWLQMRSSGLHEQEVVQRLSGGLAAHIAENTELMQPGGLNQAAVKDLFDKLMAVN PSVEVYLLGLDGRIEAQAAPPGHMKRERVALEPIRKLLSGAPLPILGDDPRSADAAKVFSAAPLKMGGRDAGYVYVVLQG EDYDALAANVATDNVLRTTLWSMALVALLGLIAGLAAFRLITRPLRELTKAVKRFETEGIASLESETPKLERLSHGTDEI ALLGQAFTQMTRRIAEQWRELTLSDQQRRELFANISHDLRTPLTSLHGYLETLLLKAGTLSDEERRRYLEIALGQSRKVG RLAQEVFELARLEYGVVKPEKENFALADLVQDVFQKFELAAEARHQQLRPDIAPGLPVVSADLGMIERVLTNLLDNAIRH TPAGGEIEVQLRPANAGVAVQVSDTGPGIPGELQKGLFVRPVFMSGARSDGSGSGGLGLVIVQRILQLHGSDIRLVPQAG KGAVFRFQLGGAAGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| c3564 | NP_755439.1 | hypothetical protein | Not tested | PAI I CFT073 | Protein | 3e-95 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_2660 | YP_004154970.1 | integral membrane sensor signal transduction histidine kinase | VFG1701 | Protein | 1e-95 | 46 |
