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Name : Varpa_2905 (Varpa_2905) Accession : YP_004155207.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type VI secretion protein Function : - COG functional category : S : Function unknown COG ID : COG3520 EC number : - Position : 3125243 - 3126439 bp Length : 1197 bp Strand : + Note : KEGG: vap:Vapar_0199 type VI secretion protein, VC_A0111 family; TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305 DNA sequence : ATGAGTACAGCCGGCTTCTCCGACGACATGCCGCAGGCCGCGCAGGTGGAGGGCGAGGAGCTGTTCGAGGCGCATTCGTT CGATGAACCCGCGGGCCAGGAGACGCCGGAAATTGCAGCGACGGGCCGCCGCGATGCGCTGCTGGCCGACCCCGCACTGT GGGCCGGCCTGGTCGAGCAGCCCTTCGAGCACGACCTGTTCATGCTGCTGCGCAGGCTCGATGCGCACGGCGACCATCCC CTGCTGGGCCGCGCACCCCGCCCATCGGATGAACCGCTGCGCCTCGGGCAGGAGCCCTCGATGGCCTTCGCGCCGTCGAA CGTCTCGGGTGTCGATGCCGATGGCGACGGGCCGCCGCGCATCTCGATCTACGGCTTCGGCCTGTTCGGCCCCAACGGTC CGCTGCCGCTGCACCTGACCGAGTACGCGCGCGAACGCAAGCGCCACCACAACGACCACACGCTCAGCGCATTCGCCGAT CTGTTCCACCACCGGCTCATCCTGCTGTTCTACCGGGCCTGGGCCGATGCGCAATCGGTCAACAGCCTGGACCGCCCCGA CGGCCACCGCTTCGTCGACTACGTGGCGAGCCTCATGAACATGGGGCAGCCGGGCCTGAAGGAGCGCGACCGCATTGCCG ACCATGCGCGCACCTTCATGGCGGGCCATCTCGTGCGCCAGACGCGCAACCCCGAGGGGCTGATCCAGATCCTGCGCCTG TACTTCGACGTGCCCGTGCGCGTCGAGGAATTCGTGAGCGACTGGGTGATGATCGACGAGCGCCAGGTGAGCCGGCTCGG GCTCTTCGGGCGCAACCACCAGCTCGGCGGCGGAGCCACCATCGGCCTGGCGGTGCGCGATGCGCAGAGCAAATTTCGCC TCGAACTCGGCCCGCTCTCGCAACAGCAGTTTCGCGAATTCCTGCCGGGCAGCCGCCGGTTGCAGCAGGTGGTCGACTGG GTGCGGCAGTACGTCGGCATCGAGTTTGCCTGGGAGCTGCGGCTGGTGCTCAGGAAGCAGGAGGCGCGCGGCATGCAGCT GGGCAGCGACCAGCGCCTCGGCTGGGGCACGTGGGTCGGCACGCGCCTGTCGGACACCGACGCTGGAGACATGCTGTTCG AGCCCGAGGCGCTGTATCCCCGCAACACAACGGCGGCCGCAGTGCCTGCCGAGTCCGCTTCTTCCATGGCCCTATGA Protein sequence : MSTAGFSDDMPQAAQVEGEELFEAHSFDEPAGQETPEIAATGRRDALLADPALWAGLVEQPFEHDLFMLLRRLDAHGDHP LLGRAPRPSDEPLRLGQEPSMAFAPSNVSGVDADGDGPPRISIYGFGLFGPNGPLPLHLTEYARERKRHHNDHTLSAFAD LFHHRLILLFYRAWADAQSVNSLDRPDGHRFVDYVASLMNMGQPGLKERDRIADHARTFMAGHLVRQTRNPEGLIQILRL YFDVPVRVEEFVSDWVMIDERQVSRLGLFGRNHQLGGGATIGLAVRDAQSKFRLELGPLSQQQFREFLPGSRRLQQVVDW VRQYVGIEFAWELRLVLRKQEARGMQLGSDQRLGWGTWVGTRLSDTDAGDMLFEPEALYPRNTTAAAVPAESASSMAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0288 | NP_454870.1 | hypothetical protein | Not tested | SPI-6 | Protein | 4e-48 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_2905 | YP_004155207.1 | type VI secretion protein | VFG2075 | Protein | 1e-52 | 46 |
