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Name : Varpa_3271 (Varpa_3271) Accession : YP_004155567.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : DotU family type IV/VI secretion system protein Function : - COG functional category : S : Function unknown COG ID : COG3455 EC number : - Position : 3523295 - 3524671 bp Length : 1377 bp Strand : - Note : KEGG: cti:RALTA_A0620 replication/virulence associated protein; outer membrane protein, OmpA family membrane protein; TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: Type IV / VI secret DNA sequence : ATGAAACCCTTTGTCGAAGATCCCATGCACAACCAGGAAGAGCCCCAAGACGACTCGAGAGGGCTCGATCCGTCTGCCGA CCCTTCATCCAACGACTCCTGGGCGGGCGATCCGGATAAGGGTGTGCATCTTGCCCCCGAGCCATCGATGCAAGTGCGTC TGCTCGCGGTCACTGCCGCCAGGAATCCCCTGCTCGAAGCCGCGCAGCCGCTGCTGCGCGCACTCGCCGACATGCCGGCG ACGCTCGGCAATGAGGGCGTCACGATCCTGCATCAGCTGCTGGAGCGCGAGGTCGCGAGCTTTCAATCGCTCTGCGGCAG CGCGCAGATCAGGCACGAACATGCGGTCGCGGCCAGCTATTCGCTGTGCACCGCACTCGACGAGGCGGCCAACAGCACGG AGTGGGGCGGCGGCAAGAATGGCGAAGCCGGCATCTGGGCCGGACAGCAACTGGCTGCGAAATTCCACGGTGACACGAAG GGCGGCGACAAGTTCTTCCTGCTGGTCGGCCGGCTGGCCGCCAGTCCGCAGGAGCACATCGATCTGCTCGAGCTGATGTA CCAGGTCCTTGGGCTGGGCTTCGAGGGACGCTTTGGCACTGCGACCAACGGGCGCCGGCAGTTGGAGACGGTTCGCCATC GGCTCTTCACGCTGCTTGGTACGGCGCGCGGCGAAGTCCCGCGCGATCTTTCCCCGCACTGGAAGGGTGTGGGTGCGGGC ACGTTCCGCCTGTTGCGCAGCATTCCGGTGTGGCTGACGGTGTCGCTGCTGACATTGGTCTTGTGCGGCCTGTTCGCCTG GTACAAGTACCAGCTGTTGCAGACCAGCGCCGACGTGGAGCAACGCATCGCCGCCATCGGCCGGATGCGTCCGCCACCCG CACCGCCAGCGCCTGCGGTCAAACCGCTGCGCCTGAAAGAGCTGCTGGCGTCCGAGATTGCACGCGGGACCGTGAGCGTG GATGAAGACGAGCACCGAAGCGCGGTCTCGTTCAGGGGTGACGACATGTTCGTCCCCGGCCAGGCGCGTCTGAACGCAAA GATTCTTCCGGTCCTGGACAAGGTGGCGGACGAGATCAACCAGGTTTCGGGCTCCGTCCAGGTCACCGGCCACTCCGACA ACCGCCCGATCAAGACCCGCGAGTTCCCCAACAACCAGGTCTTGAGCGAGAAGCGGGCCGACGCAGTGACTGCCGTGCTG CTGGGCAAGGGCGTGGTGGCGTCGCGCATCCGTACCGAAGGGCGCGGCGACACGATGCCGGTGGCCGACAGCGCAACGGC GGCTGGGCGCGCCAGGAATCGCCGTGTCGACATCGTCGTCATTCAGGGCGACGGCGGTAGCGCCGCGTCGCCCGCCGCAA AGCCGGCGGCGCGCTAG Protein sequence : MKPFVEDPMHNQEEPQDDSRGLDPSADPSSNDSWAGDPDKGVHLAPEPSMQVRLLAVTAARNPLLEAAQPLLRALADMPA TLGNEGVTILHQLLEREVASFQSLCGSAQIRHEHAVAASYSLCTALDEAANSTEWGGGKNGEAGIWAGQQLAAKFHGDTK GGDKFFLLVGRLAASPQEHIDLLELMYQVLGLGFEGRFGTATNGRRQLETVRHRLFTLLGTARGEVPRDLSPHWKGVGAG TFRLLRSIPVWLTVSLLTLVLCGLFAWYKYQLLQTSADVEQRIAAIGRMRPPPAPPAPAVKPLRLKELLASEIARGTVSV DEDEHRSAVSFRGDDMFVPGQARLNAKILPVLDKVADEINQVSGSVQVTGHSDNRPIKTREFPNNQVLSEKRADAVTAVL LGKGVVASRIRTEGRGDTMPVADSATAAGRARNRRVDIVVIQGDGGSAASPAAKPAAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0305 | NP_454885.1 | putative membrane protein | Not tested | SPI-6 | Protein | 9e-85 | 50 |
