Gene Information

Name : Varpa_3276 (Varpa_3276)
Accession : YP_004155572.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 3528880 - 3529425 bp
Length : 546 bp
Strand : -
Note : KEGG: bph:Bphy_6114 type VI secretion protein; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301

DNA sequence :

GTGACAAACAACAACAGCAGTCAGAAATTCATCGCCCGCAACAGGGCCCCACGCGTGCAGATCGAATACGACGTGGAAAT
CTACGGCTCGGAGAAAAAGATCGAACTGCCTTTCGTCATGGGTGTGCTGGCCGATCTTTCCGGCAAACCCACCCAGGCGT
TGCCGCCGGTGGCCGACCGCAAGTTCCTCGACATCGACATCGACAACTTCGACGAGCGCATGAAGGCGATCCAGCCGCGC
GTGGCCTTCGCCGTGCCCAACACGCTGTCGGGCCAAGGCCAGCTCATGGTCGACATCACCTTCGAGAGCATCGATGACTT
CTCGCCGGCCGCCGTGGCCCGCAAGGTCGAGCCATTGAGCCGGCTGCTCGAGGCGCGCACCCAACTTGCCAATCTCCAGA
CCTACATGGACGGCAAGGCCGGTGCCGAAGGCCTGCTCAACAAGCTGCTGCAAGACCCCGCGCTCATGAAGTCGTTGGCG
CAGGCTCCCAAGCCCCGCGCGGCAACAGATCACAACGACGCACCGACTGCCGACTCGGCGGCGTGA

Protein sequence :

MTNNNSSQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMGVLADLSGKPTQALPPVADRKFLDIDIDNFDERMKAIQPR
VAFAVPNTLSGQGQLMVDITFESIDDFSPAAVARKVEPLSRLLEARTQLANLQTYMDGKAGAEGLLNKLLQDPALMKSLA
QAPKPRAATDHNDAPTADSAA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0297	NP_454879.1	conserved hypothetical protein	Not tested	SPI-6	Protein	2e-67	79

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Varpa_3276	YP_004155572.1	type VI secretion protein	VFG2069	Protein	6e-60	69