Gene Information

Name : Varpa_0586 (Varpa_0586)
Accession : YP_004152918.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 654624 - 655139 bp
Length : 516 bp
Strand : -
Note : KEGG: vap:Vapar_0550 type VI secretion protein, VC_A0107 family; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301

DNA sequence :

ATGGCCAAGAGCAGTCAGAAATTCATCGCCCGCAACCGGGCGCCACGCGTGCAGATCGAATACGACGTCGAACTCTACGG
CGCCGAGAAGAAGATCCAGCTGCCCTTCGTGATGGGGGTGCTGGCCGACCTGTCGGGCAAGCCCACCGATCCGCTCGCGC
CCGTGGCCGATCGCAAGTTCCTCGAGATCGACGTCGACAACTTCGACTCGCGCATGAAGGCCATGAAGCCGCGCGCCGCG
TTCGCGGTGGAGAACTCGCTCACCGGCGAAGGCGAACTCAAGGTCGAACTGACCTTCGAGAACATGGAAGATTTTTCCCC
CGCGGCCGTCGCCAAGAAGGTCGGTGCGCTCAACAAGCTGCTCGAAGCACGCACGCAGCTGTCCAACCTGGTGACCTACA
TGGACGGCAAGAACGGCGCCGAGGAACTGCTGGCCAAGGTGCTGGAAGACCCGGCCCTCCTGCAGTCGCTGGCGGCTACC
GCCAAGCCCGAGGACGGCAGCAAGCCGGCCGCCTGA

Protein sequence :

MAKSSQKFIARNRAPRVQIEYDVELYGAEKKIQLPFVMGVLADLSGKPTDPLAPVADRKFLEIDVDNFDSRMKAMKPRAA
FAVENSLTGEGELKVELTFENMEDFSPAAVAKKVGALNKLLEARTQLSNLVTYMDGKNGAEELLAKVLEDPALLQSLAAT
AKPEDGSKPAA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0297	NP_454879.1	conserved hypothetical protein	Not tested	SPI-6	Protein	2e-58	70

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Varpa_0586	YP_004152918.1	type VI secretion protein	VFG2069	Protein	2e-61	76