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Name : Nitsa_1964 (Nitsa_1964) Accession : YP_004168956.1 Strain : Nitratifractor salsuginis DSM 16511 Genome accession: NC_014935 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1935861 - 1940018 bp Length : 4158 bp Strand : - Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR010243: IPR007121: IPR007644: IPR007642: IPR 007645: IPR019462: IPR007120: IPR007641; KEGG: sun:SUN_0131 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 DNA sequence : ATGTTAAATTCACTCCACTCCGGAAACAGGCTTCGTGTCGACTTCTCCAAAACCCCACGACAGATCGAGATTCCTCACCT ACTTCAGCTCCAGCAGAACAGTTACGAGAATTTTTTGATGATGGATGCGAAAGATCGCTCCAACAGTATCATTGAGAAGG TCTTCCGTTCCTCGTTCCCGATCCACGATCAGCAGAACCGTATCACCCTCAGCTACAAGGGGAGTGAAATCATCAAGCCC AAGTACACCATTCGCGAATGTATGGAGCGGGGATTGACCTATTCGGTTTCCCTCAAGCTCAAGATCGCTCTGACCATCTG GAACCGTGACGAGAGGACCGGAGAGCGCCTCGATCCCAAAGAGATCAAAGAGCAGGCGATCTATGTTCGTGACATTCCTC TGATGACCGATCGAACCTCCTTTATCGTCAACGGTGTCGAGCGGGTCATCGTCAACCAGCTCCACCGCAGTCCCGGGGTT ATCTTCAAAGAAGCTGAGGCGGCGACGGTCGCGAACAAGCTGATCTACTCCGCCCAGATCATCCCCGACCGGGGGAGCTG GCTCTACTTCGAGTATGACGCCAAAGACATCCTCTACGCCCGGATCAACAAGCGCCGGAAGATTCCTGTAACGATCCTTT TCCGTGCGCTCGACTACACCAAAGAGGATATTATCAAACTCTTCTACCCCACCAAAGAGATTCATATCCGCGACGGACGG TTCATCGTCCGTTTCGACCCGGCCGATTTCGTCGGAAGGGCAGAGTATGACATCCGGGACGTCGACGGCAACGTGATCGT CAATATGGGCAAGCGTTTGACCAAGAAGAAGGCCCAGAAGCTGGCGGATGAGGGGCTCGAATGGGTTGAGTATCCCGTGG AGATCCTTATGGATCGCCATTTGGCGGAACCGATCATCGACCAGGAGAGCGGTGAAGTTATTTACGATGTCATTACCCAG CTCGATGAGAACAAGATCCGCAAAATCGTCGAAATGGGGATCGAATCTTTCAAAATCGCCGACGATCTTGCCGAAGGCAC CGACAGTTCGATCATCCGTTCCTTTATCGCCGATCAGGAGAGTCTGAAACTTCTGAAACAGACCGAAGAGATCGATGACG AGAATCTGCTCTCCGCGATCCGCATCTATAAAGTGATGCGCCCTGGAGAGCCGGTGACGCCCGAAGCGGCCAAAGCCTTC CTGCGGCAGCTTTTCTTCGATCCAGAGCGTTATGACCTGACCAAAGTCGGTCGGATGAAGATGAACCATAAACTGGGTCA GGATGTTCCCGAGTATGTGACCGTCCTGACAAGCGAAGATATCATCAATACCGTCAAATACCTGATCAAGGTGAAAAACG GCGAAGGGCAGATCGACGACCGGGATCACCTGGGGAACCGGCGGATCCGTGCCATCGGGGAACTTCTGGGCAATGAACTG CACAACGGCCTGATGAAGATGCAGAAGGCGATCAAAGACAAGATGACCACCGTCAGCGGTTCTCTGGATGATCTGATGCC CCACGATCTGGTCAACTCCAAAATGATCACCAATACCATTTTGGAATTCTTCTCCGGCGGTCAGCTGAGCCAGTTTATGG ACCAGACCAACCCCCTCTCGGAGGTGACTCACAAGCGTCGTCTCTCGGCCCTGGGAGAAGGCGGACTGGTCAAAGAGCGT GCCGGCTTTGAAGTCCGGGACGTCCACCCGACCCATTATGGCCGGATCTGCCCCATCGAGACGCCGGAAGGTCAGAACAT CGGTCTGATCAACACCTTGGCAACCTACGCCAAGGTCAACGATCTGGGCTTCATCGAAGCGCCCTACAAGGTCGTCAAGG ATCGCAAGGTCACCGACGAGATCGTTTACATCACGGCGACGCAGGAAGAGAACAAGGTGATCGCTCCCGCTTCGACCAAA GTCGATGAGAACGGTTACATCGTCGAGGACCTCATTGAGACACGCCTCAACGGAAACATCGGGCTCAACGAAGCGGAGAA GGTCAACCTAATCGACGTGGCTCCCCTGATGGTTTCCGGTGCGACCGCGGCCCTGATTCCCTTCCTGGAACACGACGACG CCAACCGGGCCCTGATGGGATCGAACATGCAGCGCCAGGCCGTTCCTCTGCTCAAACCCGAAGCTCCCATGGTGGGAACC GGAATGGAAGCGATCGTCGCCAGAGATGCCTGGGAAGCGATCAAAGCCAAGCGGACCGGCGTGGTAGAGAAAGTCGACGC CCGGAACATCTATGTCAAAGGTGAAGACGAGAACGGTCTCTTTATCGACCACTATGTTCTCGAGAAGAATATGCGGACCA ACCAGAACACCAGTTTCGGTCAGGTCCCCATCGTTCACGTGGGCCAGGAAGTTAAAAAAGGGCAAGTGATCGCCGACGGT CCCAACATGGATCAGGGGGAGCTCGCCATCGGGAAGAACATTCTCGTCGCCTTTATGCCCTGGAACGGTTACAACTACGA GGATGCGATCATTCTTTCCGAGAAACTGATCCGTGAAGACACCTTTACTTCGGTGCACATTTACGAAAAAGAGATCGAAG CTCGGGAACTCAAGCACGGAACCGAGGAGATCACCCGGGATATCCCCAACATCCGCGAAGAGGATCTGATGCACCTCGAT GAGAGCGGAATTGTCAAGATCGGAACCCATGTCAAACCCGGCATGATCCTGGTAGGAAAAGTCTCTCCCAAGGGTGAGAT CAAACCGACTCCCGAAGAGCGGCTGCTGCGGGCGATCTTCGGCGACAAAGCGGGCCACGTGGTCAACAAGTCCCTCTACT GCCCCGCATCGATGGAGGGAGTCGTCGTCGACATCAAGATCTTTACCAAAAAAGGTTATGAGAAGGATGCCCGGGCGATC CGCGCTTACGAAGAGGAGCGGGCCCGCCTCGATCGGGATCACCATGACAAACTGCTGATGATTGACCGGGAGGAGATTCT CCAGATCACTTCGTTCCTGGCCAAACAGCCCCTGGCTCAGGATGTGACGGTCGGTGAGAAGACTTACAAGGCGGGGGAGA AGATCCCCGAAGAGGAGATCGCTTCCATCAACCGCTTTGCTCTGAGAAACGTAGTCGCTTCCTATCCCGAAGAGGTGCAA AAAGAGTATGAGGCGATGAAAAACTCCTTCCTGAAGCAGAAGAAGCGCCTCAAGACCGAGCACGAAGAGAAGCTGCAGAT TCTGGAGAAGGACGACATCCTTCCCAGCGGTGTGACCAAGCTGGTCAAAGTCTACATCGCCACCAAGCGGAAGATCAAAG TCGGGGACAAGATGGCGGGACGCCACGGAAACAAAGGTATCGTCTCCAACATCGTTCCCGAGATCGATATGCCCTATATG GAAGACGGCACGCCGGTCGATCTGATCCTCAACCCGCTGGGGGTCCCCTCGCGGATGAACATCGGTCAGATCCTGGAGGT CCACCTGGGGCTCATCGGCAAAAAGCTTGGAGCCCAGATCCAGGAGATCTACGAGAGCAAGCGCGCCGATTTCGTCAAAG AGCTGCGTGCCAAGATGAAAGAGATCGCCGACACCGCCAAGCTGATGAAGGCCAAGAACGAGCTGGAGACGATGAGCGAC GAGGAGCTCCTGGAGTATGCCCGCGATTGGGCCAAAGGGGTTAAGTTCGCCGCTCCCGCCTTCGAATCACCCAACGAAGA GGAGTTTGCCAAACTCTTCGAACTGGCCAAGATCGACAGTGACGGCAAAACGGTTCTCTACGACGGTAAGACCGGTGAGA GGATGCTCGAGCGGGTCAATGTGGGCTATATGTATATGCTCAAACTTCATCACCTGGTCGATGAAAAAGTCCACGCACGG AGCACCGGCCCCTATTCGCTGGTCACCCAGCAACCGGTGGGCGGTAAGGCCCTCTTCGGAGGCCAGCGTTTCGGAGAGAT GGAAGTTTGGGCCCTGGAGGCATACGGTGCCGCCCATACCCTCAAAGAGATGCTCACCATCAAGTCGGACGACGTCGAAG GACGTGCCCGGGCCTACCGCGCCATTACACGGGGCGAGAGCGTACCCGAGTCGGGAATTCCCGAGACGATGTTCGTTCTG ACGAAAGAGCTGCAGGCACTGGGTCTGGATGTGGAGCTGTATGAGAAGAAAAATGAAGAGGAAGAGAGTGAAGCATGA Protein sequence : MLNSLHSGNRLRVDFSKTPRQIEIPHLLQLQQNSYENFLMMDAKDRSNSIIEKVFRSSFPIHDQQNRITLSYKGSEIIKP KYTIRECMERGLTYSVSLKLKIALTIWNRDERTGERLDPKEIKEQAIYVRDIPLMTDRTSFIVNGVERVIVNQLHRSPGV IFKEAEAATVANKLIYSAQIIPDRGSWLYFEYDAKDILYARINKRRKIPVTILFRALDYTKEDIIKLFYPTKEIHIRDGR FIVRFDPADFVGRAEYDIRDVDGNVIVNMGKRLTKKKAQKLADEGLEWVEYPVEILMDRHLAEPIIDQESGEVIYDVITQ LDENKIRKIVEMGIESFKIADDLAEGTDSSIIRSFIADQESLKLLKQTEEIDDENLLSAIRIYKVMRPGEPVTPEAAKAF LRQLFFDPERYDLTKVGRMKMNHKLGQDVPEYVTVLTSEDIINTVKYLIKVKNGEGQIDDRDHLGNRRIRAIGELLGNEL HNGLMKMQKAIKDKMTTVSGSLDDLMPHDLVNSKMITNTILEFFSGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKER AGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYAKVNDLGFIEAPYKVVKDRKVTDEIVYITATQEENKVIAPASTK VDENGYIVEDLIETRLNGNIGLNEAEKVNLIDVAPLMVSGATAALIPFLEHDDANRALMGSNMQRQAVPLLKPEAPMVGT GMEAIVARDAWEAIKAKRTGVVEKVDARNIYVKGEDENGLFIDHYVLEKNMRTNQNTSFGQVPIVHVGQEVKKGQVIADG PNMDQGELAIGKNILVAFMPWNGYNYEDAIILSEKLIREDTFTSVHIYEKEIEARELKHGTEEITRDIPNIREEDLMHLD ESGIVKIGTHVKPGMILVGKVSPKGEIKPTPEERLLRAIFGDKAGHVVNKSLYCPASMEGVVVDIKIFTKKGYEKDARAI RAYEEERARLDRDHHDKLLMIDREEILQITSFLAKQPLAQDVTVGEKTYKAGEKIPEEEIASINRFALRNVVASYPEEVQ KEYEAMKNSFLKQKKRLKTEHEEKLQILEKDDILPSGVTKLVKVYIATKRKIKVGDKMAGRHGNKGIVSNIVPEIDMPYM EDGTPVDLILNPLGVPSRMNIGQILEVHLGLIGKKLGAQIQEIYESKRADFVKELRAKMKEIADTAKLMKAKNELETMSD EELLEYARDWAKGVKFAAPAFESPNEEEFAKLFELAKIDSDGKTVLYDGKTGERMLERVNVGYMYMLKLHHLVDEKVHAR STGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSDDVEGRARAYRAITRGESVPESGIPETMFVL TKELQALGLDVELYEKKNEEEESEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 48 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 48 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 48 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 48 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 48 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 48 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 48 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 48 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 47 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 47 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 46 |
| Nitsa_1964 | YP_004168956.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 46 |
