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Name : Isop_0105 (Isop_0105) Accession : YP_004177251.1 Strain : Isosphaera pallida ATCC 43644 Genome accession: NC_014962 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 154555 - 158265 bp Length : 3711 bp Strand : - Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR010243: IPR007121: IPR007644: IPR007642: IPR 007645: IPR019462: IPR007120: IPR007641; KEGG: psl:Psta_2551 DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb DNA sequence : ATGTCCACCGGCTCGACCATCCGACGCATCGTCCCCTCGGTCAAGAAGTTTTTCGGGCGGATTCGGGACGACTTCCCGAT TCCCGACCTGACCCAAATCCAGACTGAAAGCTACGCGCGGTTCCTCCAGGAGGACACCCCGCCCGAACAACGGAAGGATC AAGGTCTGGAAGCGGTGTTCCGTGAAATCTTCCCTATCGAAAGCTACGGCGATAAGACGCTGCGTCTGGAGTACATCAAA TACGAACTGGGCAAGCCTCGCTACGACCCGGACGAGTGCCGACGATTGAGCTTGACCTACGGCCGTCCGCTCAATGTCTG GCTGCGGTTGTGGAAGGGTGACGAGTCGATCGAGGACCACGTCTACCTGGGCGACATGCCGATCATGATCGGCGGCGGCG AGTTCATCATCAACGGTGCCGAGCGGGTGGTGGTCAGCCAGCTGCATCGCTCCCCCGGCGTGGACTTCGTGGTGGACACC GAGTCGGGCGACAAGAAACTGCACGCTTGCCGGATCATCCCGGAACGTGGCAGCTGGATCGAGCTCCAGGTCAACAAGAA AGACGCGCTGGAAGTCCGCATCGATCAGTCGGGCAAGTTCTCGGCCATGACCCTGCTCCGCGCGATGGACCCGGCCTACT CAACCGACGAGGCGATCCTGCGCGCGTTCTACGACACCGAAACCATCCACACCTCCGAAGAGGGCGCGGCCGCCCGCCTG GAAAACAAAATCGCCTGCGGCGACGTGGTGGACCCCGAAACCGGCGAGGTGCTTTGCGACAGCGGAGCCCGGATCGACCG GGTCCGCGCTCAGCTGTTCGTCGATCACAACCTCGGCGCAATCGAGGTCATGGTCGAGGTCAAAGACCCCCTGATCCTGC ACTCCCTCCAAATGGATCCGACCTCGGACCACGAAAGCGCACTGCTCAAAATCTATCAACGACTTCGCCCAGGCAACCCG CCCCAACTCGACAAGGCGCGGGATTTGTTCCGCGAAAAATTCTATGACACCAACCGCTATCGCCTGGGTCGGGTGGGACG GTTCCGGATCAACCGGAAATTCAACCTGGACCTCCCCGAAGACAAGATGACCCTGGACGCAGCCGACTATGTCCACGCGA TCCGCTACATCATCGACCTGCGGCGCAACAAAGGCCACATCGACGATATCGACCACCTGGGCAACCGTCGTCTGCGAACC ATCGACGAACTCGCAGCCGACGAGATCCGCAAGGGGTTCCTCAAACTGCGGCGCACCGTCCAAGAACGAATGACGATGAA GGACGCGGAAGATTTGAACCCGCGTTCGCTCATCAATCAGAAGAGCATTTCGGCGGCGATCGATTACTTCTTCGGTCGGG GCGAACTGTCACAGGTGGTGGACCAAACTAACCCGTTGGCCCAGCTGACCCACGAGCGGCGGCTCTCGGCGCTTGGTCCA GGAGGTCTCAATCGCAAGCGTGCCGGTTTCGAGGTGCGCGACGTGCATATCTCGCACTACGGCCGAATCTGCCCAATCGA AACCCCCGAAGGAACCAACATCGGCCTGATCTCCTCGCTGGCCAACTACGCCCGGGTGGATGAGTACGGCTTTCTGGTTT GTCCCTACCGGGTGGTCGAAAACGGCAAGCCGACTAACGAAGTGCGCTGGATGCGCGCCGACGACGAAAACGACGTTTAT CTTGCCCCCGCCGACGTGCCTCTGGACGAACATGGCCGCATCAAGGGTCCCAACACGATCGCGCGGTATCAGTCGGACAT CCACATGATTCCGTCCGACAAGGTTCAATACATCGACATTTCACCTCGGCAGGTGGTAGGAGTCTCCGCCGGTCTGATCC CGTTTTTGGAACACGACGACGCCAACCGCGCGTTGATGGGTTCGAACATGCAACGCCAAGCGGTGCCGCTGCTGGTCGCC GAGCCTCCCCTGGTGGCCACCGGCCTGGAAGGCGCTGTGGCCATGAACTCGGGGATGGTGGTCCGCGCGCGCGAGGACGG AGTCGTCACCGAGGTGGACTCCACCAAGGTGGTGATTGATGGGGTGCATGTTTACAAGTTGCGGAAATACATCGGGCTCA ACGAACGCACCTGCCTCAACCAAAAGCCGGTGGTGTCGGTGGGTCAGCAAGTCAAGAAGGGCGATTTGCTGGCAGACGGA GCCAGCACCTACCAGGGCGAACTAGCGCTAGGACGCAACGTCCTCGTCGCCTTCATGTCGTGGGATGGCTACAACTTCGA GGACGCGATCATCCTGTCCGAACGGTTGGTCAAGGAGGATGTCTACACTTCGATCCACATTGAGGAGTTCGAGGCGGACA TCCGCGAGACCAAGCTGGGCCGCGAGGAGTTCACCCGCGACATCCCCAACGTCTCAGAAAAGGCGCTTCGGCACCTGGAC GAAAACGGGATCGTGGCGGTGGGAACCTACGTCAAGCCGGGCGACATTCTCGTGGGCAAAGTGGCCCCCAAGAGCAAAAG CGAACTGTCGCCTGAGGAGAAGCTGCTGCACGCGATCTTCGGGCGCTCGGGGGAGGATGTCAAAAACGACAGCCTGGAGG TTCCCTCGGGCGTGGAGGGCATCGTGTTGTCCACTCAGCGGTTCTCCCGCCGCACCAGCCTCACCGAAGAGGAACGCAAA GCCCACGACAAGGAGATCAAGGACACCGAACAGGCCGAGTCGATCAAGATCGCCGAAGCCTATCGTCAAATGATCAAAGA ACTGGAGGAGGTCATCGGCGGCCCAGTGGTCCACAAGGAAACTGCCCGTCCCTACGGGCGGGAGAAAGACCCGGTGGCGT TGGCCGAGGAAAGTCAGTCATTCAAGCTCGAACACATCGACCTACACGGCCCCGATATCCTCTCCAAAGCGCGCGAGGTT CACCGCCGTCACGCCGTCCGAATCGATAATCTGCGGGACGAGAAGGAACGCAAACTCAACAGCCTCAAGCTGGGCGACGA GTTGCAGACCGGCGTTCTGCAAATGGTCAAGATTTACGTCGCCACCAAACGGGTCATCTCGGTGGGCGACAAGATGGCCG GACGCCACGGCAATAAAGGGGTCATCGCCAAAATCCTCCCCGAAGAGGATATGCCGTTCCTCGCCGACGGCACTCCCGTG GAGATTCTGCTCAACCCCCTGGGGGTGCCTAGCCGGATGAACGTCGGCCAAATCCTGGAGACCCACCTGGGTTGGGCCGC CGCCAAACTCGGCTTCCGCGCCATTTGTCCCGTCTTCGACGGAGCCGACGAATCGGTCATCCGCCAACACCTCAAGGAGG CCGGTCTCCCCGAAAACGGCAAAGCCCAACTCTACGACGGCCGAACCGGCGAACCGTTCGACCAAAAGGTGACAGTTGGC TACATGTATATGCTCAAACTTCACCATCTGGTGGACGACAAGATTCACGCTCGGGCCACTGGTCCCTACTCGCTGATCAC CCAGCAGCCGTTGGGCGGCAAGGCCCGCTTCGGCGGCCAGCGGTTCGGCGAGATGGAGGTGTGGGCGTTGGAAGCCTATG GCGCGGCTTACATTCTTCAGGAACTGTTGACCGTCAAATCGGACGACGTGGAAGGTCGGACCAAGATTTACGAGTCGATG GTCAAAGGTGAGAATACCCTCGAAGCCGGTACTCCGGCGAGCTTTGATGTGTTGACCAACGAGATTCGGGGTCTGGCTCT GAACATGCAACTCGAAAAGAAACGGGTCTGA Protein sequence : MSTGSTIRRIVPSVKKFFGRIRDDFPIPDLTQIQTESYARFLQEDTPPEQRKDQGLEAVFREIFPIESYGDKTLRLEYIK YELGKPRYDPDECRRLSLTYGRPLNVWLRLWKGDESIEDHVYLGDMPIMIGGGEFIINGAERVVVSQLHRSPGVDFVVDT ESGDKKLHACRIIPERGSWIELQVNKKDALEVRIDQSGKFSAMTLLRAMDPAYSTDEAILRAFYDTETIHTSEEGAAARL ENKIACGDVVDPETGEVLCDSGARIDRVRAQLFVDHNLGAIEVMVEVKDPLILHSLQMDPTSDHESALLKIYQRLRPGNP PQLDKARDLFREKFYDTNRYRLGRVGRFRINRKFNLDLPEDKMTLDAADYVHAIRYIIDLRRNKGHIDDIDHLGNRRLRT IDELAADEIRKGFLKLRRTVQERMTMKDAEDLNPRSLINQKSISAAIDYFFGRGELSQVVDQTNPLAQLTHERRLSALGP GGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLANYARVDEYGFLVCPYRVVENGKPTNEVRWMRADDENDVY LAPADVPLDEHGRIKGPNTIARYQSDIHMIPSDKVQYIDISPRQVVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVA EPPLVATGLEGAVAMNSGMVVRAREDGVVTEVDSTKVVIDGVHVYKLRKYIGLNERTCLNQKPVVSVGQQVKKGDLLADG ASTYQGELALGRNVLVAFMSWDGYNFEDAIILSERLVKEDVYTSIHIEEFEADIRETKLGREEFTRDIPNVSEKALRHLD ENGIVAVGTYVKPGDILVGKVAPKSKSELSPEEKLLHAIFGRSGEDVKNDSLEVPSGVEGIVLSTQRFSRRTSLTEEERK AHDKEIKDTEQAESIKIAEAYRQMIKELEEVIGGPVVHKETARPYGREKDPVALAEESQSFKLEHIDLHGPDILSKAREV HRRHAVRIDNLRDEKERKLNSLKLGDELQTGVLQMVKIYVATKRVISVGDKMAGRHGNKGVIAKILPEEDMPFLADGTPV EILLNPLGVPSRMNVGQILETHLGWAAAKLGFRAICPVFDGADESVIRQHLKEAGLPENGKAQLYDGRTGEPFDQKVTVG YMYMLKLHHLVDDKIHARATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYESM VKGENTLEAGTPASFDVLTNEIRGLALNMQLEKKRV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Isop_0105 | YP_004177251.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 46 |
| Isop_0105 | YP_004177251.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| Isop_0105 | YP_004177251.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| Isop_0105 | YP_004177251.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| Isop_0105 | YP_004177251.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| Isop_0105 | YP_004177251.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| Isop_0105 | YP_004177251.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| Isop_0105 | YP_004177251.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 44 |
