Gene Information

Name : Isop_1626 (Isop_1626)
Accession : YP_004178759.1
Strain : Isosphaera pallida ATCC 43644
Genome accession: NC_014962
Putative virulence/resistance : Virulence
Product : microcompartments protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 2366365 - 2366703 bp
Length : 339 bp
Strand : +
Note : COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808: IPR000249; KEGG: psl:Psta_3281 microcompartments protein; PFAM: microcompartments protein; SPTR: Ethanolamine utilization protein; PFAM: BMC domain

DNA sequence : 
ATGTCCAACGGTGGCGCTGCGCAATCCCCCGCGTCGGCCAGTCCCGCTCCTGCTCCCGCGGCCCGCGGCGGCAACGACGC
GCTGGGTCTGGTCGAGACCAAGGGTCTAGTCGGCCTGATCGAAGGAACCGACGCGATGCTCAAAGCGGCCAACGTGACCC
TGGCCGGGCGGGTCCAAGTCGGCGGTGGCTTCGTGACCACGATGGTCCGCGGCGACGTCGGCTCGGTCCGCGCGGCGGTC
GAAGCCGGAGCCGAGGCCGCGGGCCGTGTGGGCGAACTTGTCTCGGCCCACGTCATCCCCCGGCCCGATCCCTCCCTCCT
CAAGGTCTTTCTGGCCTGA

Protein sequence : 
MSNGGAAQSPASASPAPAPAARGGNDALGLVETKGLVGLIEGTDAMLKAANVTLAGRVQVGGGFVTTMVRGDVGSVRAAV
EAGAEAAGRVGELVSAHVIPRPDPSLLKVFLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 60
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 9e-11 60
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 8e-10 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Isop_1626 YP_004178759.1 microcompartments protein VFG1596 Protein 1e-11 60
Isop_1626 YP_004178759.1 microcompartments protein VFG1597 Protein 4e-11 60
Isop_1626 YP_004178759.1 microcompartments protein VFG1598 Protein 3e-10 53