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Name : Despr_0784 (Despr_0784) Accession : YP_004194249.1 Strain : Desulfobulbus propionicus DSM 2032 Genome accession: NC_014972 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 867887 - 871960 bp Length : 4074 bp Strand : + Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR007644: IPR007642: IPR007645: IPR019462: IPR 007120: IPR007641: IPR010243: IPR007121; KEGG: dps:DP1117 DNA-directed RNA polymerase, beta-subunit; PFAM: RNA polymerase Rpb2 d DNA sequence : ATGAACAGAGTACGTAAGAGTTTTGCTAAAACAAGCCAGATCATTGAACCGCCACATCTCATTGCTATGCAGCGGGAATC TTACGAGCACTTTCTGCAACGAGATATTGCGCCTGAATTACGAAAAGATCACGGGTTGCAATCTATCTTTCAAAGCATTT TCCCTATTACAGATTTCAACGGATTGTGTTCGCTTGAATTCGTTCGTTATTCTTTCGGAGAGCCCAAATACACCGTCGCC GAATGTATCGAGCGGGGAATGACCTATGAAGCACCTCTTAAAATCACCGTCAGGCTCATCACCTTTGACGTCGATGAGGC GACGGGGGTTCAGTCTGTGCGTGATATCAAGGAACAGGAGGTATTCCTCGGGGCTTTACCGCTCATGACGCAAGACGGAG TGTTTGTGGTCAACGGCACGGAACGCGTCATCGTAAATCAGCTGCAACGGTCACCCGGACTCTTCTACACCCATGATCAT GGTAAGTCCCATGCTTCCGGCAAAAGGCTCTATTCGGCGCGAATTATTCCGGTGCGGGGGTCTTGGCTTGATTTCGAATT CGATATTAAAGATATCCTTTATGTGCGCATCGACAGACGCCGTAAGCTGCCAGTAAGTGTTCTGCTGAAAGCCTTGGGAT ATGGCGATGAACAATTGCTAAATGAGTTCTATCATTCCGATGTCATCACGTGTGAAGGAGAAAAGTATTCGATCGCCTTC AACGCTATCACCTTCGCCAATCAGCGGTTGAACACCGACATCATTCATCCCGGCGATGGGACTATAATTGCCAAAAAAGG CAAAAAGGTCACCAAGACCCTTGCGAAGAAGATCGAGAGCCTTGGCGTCGCCTCCATCTCCATTGATGTCGAGGAGTTAT ACGGTCGCTACTTTGCCCGGGATATTGTCAACGAGCAGACTGGAGAAGTTGTTGTCAAGTGCAACGACACCGTAACACCG GCAACGCTTGAAGCTCTCGCCGTGGCCGGAATCAATTCTTTTTCCCTTCTGTTCATTGATGGCGTTAATTTCAGTGAATC GTTCCGCAAAACATTGCTGCTCGACAAGATTAAAGATACCGATGAAGCATTGATTGAAATTTATCGTCGGCTCAGGCCGT CAAGTCCACCGACCCTGGAGGTGGCCAAGGCTTTCTTTGACAATCTTTTTTTCAATCCTGCCACTTATGATCTCTCCGAG GTAGGACGGTATAAAATCAACACCAAGCTCGGCGTCGATACCCCGATCGAGGTGCGGACACTGACTCAGGAAGATATCAT CAAAAGTGTCAAATACCTCGTTCGAATCAAGGATGAATTGAAGGATGGTGACGATATTGATCACCTTGGCAACCGTCGTG TTCGAACCGTGGGCGAACTGTGCGAGAATCAATTCCGCATGGGCCTGGTGCGGATGGAGCGAGCCATCAAAGAGCGGATG ACCCTCCAGGAAATTGAGACCCTGATGCCGCACGACCTCGTCAATCCCAAACCGGTGACCTCTGCGATCAAGGAATTTTT TGGTACCAGCCAACTTTCCCAGTTCATGGATCAAACCAATCCTCTTTCCGAGGTAACCCATAAGCGCAGGCTTTCTGCGC TGGGCCCAGGCGGTCTTTCTCGGGAACGCGCTGGTTTCGAAGTGCGTGACGTTCATCCGACTCATTATGGCCGGATTTGT CCGGTAGAAACCCCTGAGGGACCAAATATCGGCCTGATTGTCAGCTTAGCCACCTATGCGATGGTGAATCCGTATGGATT TATCGAGACTCCGTATCGCTATGTCCAAGATCGAATTGTTTCGAATGAATACAAGTACCTGTCTGCCTTGCAAGAAGAGG ATCACGTCATCGCTCCGGCGAAAATTCCTTTGGATGGCGACCGAATAGCCGATGATTATTTGATAGCCCGGCAAGAAAGT GAGGTGGCCATGGTCGCCGCTGACGATATCACGATGATGGATATCGCTCCCAACCAGATGGTTTCGGTTGCGGCCTCGTT GATCCCTTTCCTTGAGAATGACGACGCCAACCGCGCATTGATGGGTTCCAACATGCAGCGACAGGCAGTGCCGTTGCTGA AAACCAGCGCGCCCCTGGTTGGGACCGGCGTGGAGAAATATGTAGCTCGTGATTCCGGTGCCTGTCTGTTGGCAGGCGGA GACGGCGTGGTTGAGGAGGCGGATGCTAATCGCATCGTGGTGCGATATGATCAGCCAGGAGTGGATGGATTTGATACGGG TATTGGTGTCTATCATTTGTCCAAGTATAAAAAATCCAATCAAAACACATGCTTTAATCAAAAAGCTCTTGTGCTTCCTG GGCAACGTGTTGTGAAGGGGACAGTCTTGGCAGATGGACCGTCCACGGAAGTCGGAGAACTCGCTTTGGGAAAAAATGTG ACCATCGCGTTCATGCCCTGGCGAGGCTACAACTTTGAAGATTCCATCCTGATCAATGAGCGTTTACTTAAAGAAGATAC CTTCACCTCCGTGCATATTGAAATCTTTGAAACAATGGCACGGGATACCAAGTTGGGAAAAGAAGAGATTACCCGCGATA TTCCCAATGTCGGTGAGGAAGGACTCCGTAATCTCGATGATTCCGGTATTGTCCGCATCGGGGCTGAGGTTCGCGCCGGT GACATGCTGGTCGGCAAGGTCACTCCGAAAGGCGAGAGTATGCTTTCGCCTGAAGAAAAATTGCTCCGGGCGATTTTTGG CGAGAAAGCCGGTGATGTAAAAGATTCCTCCTTGCGGGTACCGCCGGGAATCGAAGGAGTGGTGATCGACGCCAAAGTCT TTTCGAGAAAGGGAGTCGACAAAGACGAGCGGACGCTGATGATCGAGGAAATGGAGATCGAACGCCTCAATCGGGACATG GAAGCCGAGCTGAGAAGTTTGAAAAACGGCGTGCGCAACTCCCTGGCTGTTCTTCTCGAAGGTCGGACGGCTAAAAGTGA TATCAAGGACAAGAAAGGAAAGATCATCCTTAAATTAGGCAAACAACTCACCGCCAAGGTTGTCTCCCAAATTAGTTTCG CCGAACTCCATGACTTGGATTTTTCGGAAAGAGCCAAGTATGAGGACGAGATTGACGCGATCTTCAAACGCTACAATACC CAGGCCTCCGTTGTTCGCGGGCGTTATCAGGGCATTGTTGAGCGTATGGAAAAAGGAGATGATCTGCCCCCCGGCGTGGT GAAAATGGTGAAAATCTATGTGGCCACCAAGCGTAAACTGGCGGTTGGCGACAAAATGGCGGGGCGTCACGGCAATAAAG GTGTTGTTTCACGTCTGCTTCCCGAGGAGGATATGCCCTTTTTTGCCGATGGAACTACTGTCGATATTGTGCTCAATCCC CTTGGCGTGCCTTCGCGAATGAATGTTGGCCAGGTGCTTGAATGCCATCTTGGTTTTGCCGCCAAAAGGCTGGGAGAACA ACTCTCGGCTGTAGCGAAACAGAAGGAGGCCGCACGGCTCAAGCAAAGGTTGGCGCAGATTTATTCCCAAGAGGAGTATG CTCGATTAACTGAAGGACTCAGCGACGAGGAATTACTCGACATGATGTGCAAGTACGGCCATGGCATCCATGTGGCCACT CCGGTGTTCGACGGTGCTTCAGAGAATGAGATACGCCAGGCTCTCGTGGAAGCGGGTGTCGATGAGGTCGGGCAGTCAAC ATTGTACGACGGCCTGACCGGTGAACCTTTTGATAACCAGGTAACGGTGGGCGTGATGTATATGCTTAAGCTGCACCATC TGGTGGACAACAAAATCCACGCCCGGTCAACCGGTCCCTATTCACTTGTCACTCAACAGCCCCTCGGCGGGAAAGCGCAG TTCGGCGGCCAGCGTTTGGGTGAGATGGAGGTTTGGGCCATGGAGGCCTATGGGGCGGCCTACACCCTCAAAGAATTCTT GACGGTGAAATCGGACGATGTTGAAGGCCGGACGACGATGTATGAAAAAATCGTCAAAGGAAACAATTTCTTGGAAACAG GGTTGCCTGAATCATTCCATGTTCTCGTCAAGGAATTGAAAGGGCTCTGCCTCGATATCGAATTGCTCGAGTAA Protein sequence : MNRVRKSFAKTSQIIEPPHLIAMQRESYEHFLQRDIAPELRKDHGLQSIFQSIFPITDFNGLCSLEFVRYSFGEPKYTVA ECIERGMTYEAPLKITVRLITFDVDEATGVQSVRDIKEQEVFLGALPLMTQDGVFVVNGTERVIVNQLQRSPGLFYTHDH GKSHASGKRLYSARIIPVRGSWLDFEFDIKDILYVRIDRRRKLPVSVLLKALGYGDEQLLNEFYHSDVITCEGEKYSIAF NAITFANQRLNTDIIHPGDGTIIAKKGKKVTKTLAKKIESLGVASISIDVEELYGRYFARDIVNEQTGEVVVKCNDTVTP ATLEALAVAGINSFSLLFIDGVNFSESFRKTLLLDKIKDTDEALIEIYRRLRPSSPPTLEVAKAFFDNLFFNPATYDLSE VGRYKINTKLGVDTPIEVRTLTQEDIIKSVKYLVRIKDELKDGDDIDHLGNRRVRTVGELCENQFRMGLVRMERAIKERM TLQEIETLMPHDLVNPKPVTSAIKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLSRERAGFEVRDVHPTHYGRIC PVETPEGPNIGLIVSLATYAMVNPYGFIETPYRYVQDRIVSNEYKYLSALQEEDHVIAPAKIPLDGDRIADDYLIARQES EVAMVAADDITMMDIAPNQMVSVAASLIPFLENDDANRALMGSNMQRQAVPLLKTSAPLVGTGVEKYVARDSGACLLAGG DGVVEEADANRIVVRYDQPGVDGFDTGIGVYHLSKYKKSNQNTCFNQKALVLPGQRVVKGTVLADGPSTEVGELALGKNV TIAFMPWRGYNFEDSILINERLLKEDTFTSVHIEIFETMARDTKLGKEEITRDIPNVGEEGLRNLDDSGIVRIGAEVRAG DMLVGKVTPKGESMLSPEEKLLRAIFGEKAGDVKDSSLRVPPGIEGVVIDAKVFSRKGVDKDERTLMIEEMEIERLNRDM EAELRSLKNGVRNSLAVLLEGRTAKSDIKDKKGKIILKLGKQLTAKVVSQISFAELHDLDFSERAKYEDEIDAIFKRYNT QASVVRGRYQGIVERMEKGDDLPPGVVKMVKIYVATKRKLAVGDKMAGRHGNKGVVSRLLPEEDMPFFADGTTVDIVLNP LGVPSRMNVGQVLECHLGFAAKRLGEQLSAVAKQKEAARLKQRLAQIYSQEEYARLTEGLSDEELLDMMCKYGHGIHVAT PVFDGASENEIRQALVEAGVDEVGQSTLYDGLTGEPFDNQVTVGVMYMLKLHHLVDNKIHARSTGPYSLVTQQPLGGKAQ FGGQRLGEMEVWAMEAYGAAYTLKEFLTVKSDDVEGRTTMYEKIVKGNNFLETGLPESFHVLVKELKGLCLDIELLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 54 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 54 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 53 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 53 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 52 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 52 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 52 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 52 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 52 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 52 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 51 |
| Despr_0784 | YP_004194249.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 51 |
