Gene Information

Name : Rahaq_0548 (Rahaq_0548)
Accession : YP_004211303.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : TonB-dependent siderophore receptor
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG4771
EC number : -
Position : 593751 - 596045 bp
Length : 2295 bp
Strand : -
Note : KEGG: spe:Spro_3430 outer membrane receptor FepA; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor

DNA sequence :
ATGGATTTCAGGGCAGAATCCACTATGAAAAGCAGGCTACCACACTATTCTCTGGCAACCTTAATCGGGCTGGGATCAGC
ACTTTCTTTGCCCGTCAGCGCGGCAGAAAGCACCACAACCCGCACAACAGACGCCAGCCAGAACACCGCAGAAACACAGG
AAGACACCAGCGACACACTGGTTGTCACCGCCGCACAGCAAAACCTTCAGGCTCCCGGCGTTTCCACCATCACTTCTGAT
GAAATCCAAAAACGCCCTCCGGCACGCGACATCAACGAACTTATCCGCACCATGCCCGGCGTAAACCTGACCGGCAACTC
TACCAGCGGCCAGCGCGGTAATAACCGCCAGATCGACATCCGGGGTATGGGCCCGGAAAATACCTTAATCCTGATCGACG
GTAAGCCGGTGAACAGCCGCAACTCAGTGCGTCAGGGCTGGCGCGGTGAGCGTGATACCCGCGGCGACACAAGCTGGGTT
CCGCCCGATATGATCGAGCGCATCGAAGTGATCCGCGGCCCGGCGGCGGCGCGTTACGGTAACGGCGCGGCGGGTGGCGT
GGTGAACATCATCACTAAAAAAGACACTCAGGAGTGGCACGGTTCCTGGAATACCTATCTGAACGCACCACAACATAAGG
ACGAAGGCTCGACCAAACGTACCGATTTCAGCCTCTCCGGCCCGCTCAACGATCAGTTCAGTTTCCGCCTGTTCGGTGGC
TACAGCAAAACGCAGGCTGACGCGCAATATATCAACGAGGGTCATCAGTCTGAGCGTACCGGCACCTATGCCGACACCGT
TCCGGCAGGTCGCGAAGGCGTGATCGATAAGAATATCGACGCCCTGTTGCACTGGGATTTTGCCCGTATGCAGTCGCTGG
AATTTGAAGTGTCCAACAGCCGTCAGGGCAACCTGTACGCAGGCGACACGCAGAACACCAACACCAGTGATTTGGTGAAA
AGCATGTACGGTGAAGAGACTAACCGCATTTACCGCCAGTCCTACTCGGTGACCTACAAAGGCGCGTGGGATAACGGTGT
GACCACCAACAACTACGTGCAGTACGAAAAAACCCGTAACTCGCGCATGGATGAAGGGCTGGCGGGCGGTACCGAAGGCA
TCTTCTCTGACGAAGACTTCAACACCATCGCACTGGGCGACATTCTGGCGCACAGCGAAGTCAGTATTCCGTTTGAACTG
GGCGTGCCGCAAACCGCGACGTTCGGCACGGAATGGAACCAGCAGAAGATGAAAGATCCGTCTTCCAACACGCAGGCTAT
GCTCGGCGGCGCGATTGCCGGTACCGACAGCACCAACCGCAGCCCCTATTCTCAGGCAGAGATTTTCTCGCTGTTTGCCG
AAGATAATATTGAGCTGACCGACAGCACCATGCTGGTGCCGGGTCTGCGTTTCGACCATCACTCCATTGTCGGCAATAAC
TGGAGCCCGTCGCTGAACCTGTCTCAGGAACTGGGCGACGATTTCACCCTGAAAATGGGTATCGCCCGCGCCTATAAAGC
GCCGAGCCTGTATCAGACCAACCCGAACTACGTGCTGTACAGTAAAGGCCAGGGTTGTGCGGCCAGCGGCGGCGGTTGTT
ATCTGGTGGGGAATAAAGATCTGGATGCGGAAACCAGCGTTAACAAAGAGATCGGACTGGAATTCCACCGCAACGGTTAT
CAGGCGGGCGTGACCTATTTCCGCAACGATTATCGCAACAAAATCGAATCCGGTTATCTGCCAACCGGCACGTCCTCCAC
CGGCACAACTGATGTATATAAATGGGAAAACGTGCCGAAAGCCGTGGTTCAGGGGCTGGAGGGCACGCTGAATATTCCGG
TCAGCAGCACCGTTTCCTGGAATAACAACGGCACGTACATGATTGAAAGTAAAAACAAAGAGACCGGCGATTATCTGTCG
ATCATCCCGGAATTTACCATCAACTCCACGCTGAGCTGGCAGGCGACGGAAGATCTCTCTCTGCAATCTACCCTGACCTG
GTATGGCCGTCAGAAGCCGAAGAAATACAACTACAAAGGTGAAGCCGTCACCGGCAGTGAGAAGAATGAAGTCAGCCCGT
ATTCAGTGGTCGGCATGAGCGGCACCTACACCGCGACCAAAAATGTCAGCGTCACGGCGGGTATTGATAACGTCTTCGAC
AAACGCCAGTTCCGTGCGGGTAATGCCCAGACCGTGGGTAATGCCACCACCGGCGCCTATATGTACGGCGCAGGCGCGGC
AACCTACAACGAGCCGGGCCGCACGTTCTATATGAGCCTGAATACGCACTTCTGA

Protein sequence :
MDFRAESTMKSRLPHYSLATLIGLGSALSLPVSAAESTTTRTTDASQNTAETQEDTSDTLVVTAAQQNLQAPGVSTITSD
EIQKRPPARDINELIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVNSRNSVRQGWRGERDTRGDTSWV
PPDMIERIEVIRGPAAARYGNGAAGGVVNIITKKDTQEWHGSWNTYLNAPQHKDEGSTKRTDFSLSGPLNDQFSFRLFGG
YSKTQADAQYINEGHQSERTGTYADTVPAGREGVIDKNIDALLHWDFARMQSLEFEVSNSRQGNLYAGDTQNTNTSDLVK
SMYGEETNRIYRQSYSVTYKGAWDNGVTTNNYVQYEKTRNSRMDEGLAGGTEGIFSDEDFNTIALGDILAHSEVSIPFEL
GVPQTATFGTEWNQQKMKDPSSNTQAMLGGAIAGTDSTNRSPYSQAEIFSLFAEDNIELTDSTMLVPGLRFDHHSIVGNN
WSPSLNLSQELGDDFTLKMGIARAYKAPSLYQTNPNYVLYSKGQGCAASGGGCYLVGNKDLDAETSVNKEIGLEFHRNGY
QAGVTYFRNDYRNKIESGYLPTGTSSTGTTDVYKWENVPKAVVQGLEGTLNIPVSSTVSWNNNGTYMIESKNKETGDYLS
IIPEFTINSTLSWQATEDLSLQSTLTWYGRQKPKKYNYKGEAVTGSEKNEVSPYSVVGMSGTYTATKNVSVTAGIDNVFD
KRQFRAGNAQTVGNATTGAYMYGAGAATYNEPGRTFYMSLNTHF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iroN CAC43424.1 IroN protein Virulence PAI III 536 Protein 2e-154 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_0548 YP_004211303.1 TonB-dependent siderophore receptor VFG0923 Protein 0.0 73
Rahaq_0548 YP_004211303.1 TonB-dependent siderophore receptor VFG1650 Protein 9e-155 50
Rahaq_0548 YP_004211303.1 TonB-dependent siderophore receptor VFG0935 Protein 7e-155 50