Gene Information

Name : BC1001_0173 (BC1001_0173)
Accession : YP_004226698.1
Strain :
Genome accession: NC_015136
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3520
EC number : -
Position : 192830 - 193921 bp
Length : 1092 bp
Strand : -
Note : KEGG: bpd:BURPS668_A0340 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305

DNA sequence : 
ATGGATCGCGCAGCGCACACCGCCACGGTACACGATACCGGGCTGTCGCAGGACTGGACGGATGAGCTTCACGCAAAGCC
TTGGCGTCATGGCTTTCTCGCGCTTCTGCGCCGCCTAGGAGCCGATCCGCGGATCGACCGGATTGGCACCGCGCGGCGGC
CGCAGGCAGAGCCATTCCGTCTGGGGCAACAGCCGAGCCTCGCCTTCGCCCCGCGCGAAATTGCGGGCGTGACGGAGACC
GGCGGGCGCATCAAGATTCGTCTATTCGGCCTTGGCATGCTGGGGCCGAACGGCCCCTTGCCGCTTCACGTCACGGAAAT
CGCGCGCGACCGTGAGGAAAGCTGCCGTGACGCAACGCTCGTCAATTTTCTCGACATTTTTCATCATCGCTACCTCACGC
TGCTGTATCGCGCGTGGGCTTCCGCCCAGGCGGCGGCTGGGCTCGATCGGCCCGGCGACGAGCGGTTCTCATTCTATGTC
GCCAGTCTTGGCGGTCTCTATCCGGAAGAGCCACCCGCACGACGGTTGCCTTCTCATGCGCACCTGTCGGCATCGGCACA
TCTCGTTCGCGAAGCGCGCAACCCCGATGGACTACGCGCAACGCTCGCCCGCTACTTCGGCGTGCCGGTCGCCATTGAGG
AATACGTCTTTCACTGGATCGTGCTGGATCGCGAAGATCACAGCTACATGGGCCGGCCAGGCGCTGCTTCGCTCATGAAC
AGCGGCGCGGTGCTCGGCGAGTGTGTGCCCGACCGGCAGCATCGGCTGCGGATTGTCATCGGCCCACTCGACATGGATGA
GTATCTGCGCTTCACGCCACGCGGCGGCGCCCTGCCGGTCCTCGTGGAATGGGTTCGCGCATTTATCGGCCATGAATTCG
AGTGGGAACTCGAGCTTCGAATCCGCCCACATAGCGCGCCGCCCGCCGTGCTGGGCGGAGCTCAGCAGCTTGGCTGGTCG
GGATGGCTCGGTCGGTCGCCGAGCGACGAGCCGGTGACCGGCATGCGCTTTGAGCCGGAGGAGTACGTGCATCAGTTCGT
CCCCGCGGGAGTTCGATCGGCTACGCCACGCAACACGGAAATCATGCAATGA

Protein sequence : 
MDRAAHTATVHDTGLSQDWTDELHAKPWRHGFLALLRRLGADPRIDRIGTARRPQAEPFRLGQQPSLAFAPREIAGVTET
GGRIKIRLFGLGMLGPNGPLPLHVTEIARDREESCRDATLVNFLDIFHHRYLTLLYRAWASAQAAAGLDRPGDERFSFYV
ASLGGLYPEEPPARRLPSHAHLSASAHLVREARNPDGLRATLARYFGVPVAIEEYVFHWIVLDREDHSYMGRPGAASLMN
SGAVLGECVPDRQHRLRIVIGPLDMDEYLRFTPRGGALPVLVEWVRAFIGHEFEWELELRIRPHSAPPAVLGGAQQLGWS
GWLGRSPSDEPVTGMRFEPEEYVHQFVPAGVRSATPRNTEIMQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0288 NP_454870.1 hypothetical protein Not tested SPI-6 Protein 1e-75 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_0173 YP_004226698.1 type VI secretion protein VFG2075 Protein 3e-44 41