Gene Information

Name : BC1001_0179 (BC1001_0179)
Accession : YP_004226704.1
Strain :
Genome accession: NC_015136
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 201229 - 201768 bp
Length : 540 bp
Strand : +
Note : KEGG: bph:Bphy_6114 type VI secretion protein; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301

DNA sequence : 
ATGTCCGTTTCCAGCAGTTCGCAGAAGTTCATCGCACGCAATCGCGCACCGCGCGTGCAGATCGAGTATGACGTCGAGGT
CTATGGTTCCGAGAAGAAAGTCGAGCTGCCCTTCGTCATGGGCGTGCTCGCGGATCTTTCCGGCAAGCCAGTCGAAAACC
TGCCTGCGGTCGCCGATCGCCGTTTCCTCGACATCGACGTCGACAACTTCGACGAGCGCATGAAGGCCATCCGGCCGCGC
GTCGCGTTCGCGGTCCCGAACACGCTGTCCGGCGAAGGCCAGCTCATGGTCGACATGACCTTCGAGAGCATCGAGGACTT
TTCGCCTGCCGCAGTGGCGCGCAAGGTGGACTCGCTGCGTCAGCTGCTCGAAGCGCGCACGCAACTCGCAAACCTGCAGA
CGTACATGGACGGTAAGTCCGGCGCGGAGTCGCTCGTCAACACCCTTCTCCAGGATCCGGCGCTCCTCAAGGCGCTTGCT
TCCGCGCCGAAGCCCGAGGCCGCCGCTGCGGCGCCCGACGCCGCAGCCAGCGCGGTTTGA

Protein sequence : 
MSVSSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVENLPAVADRRFLDIDVDNFDERMKAIRPR
VAFAVPNTLSGEGQLMVDMTFESIEDFSPAAVARKVDSLRQLLEARTQLANLQTYMDGKSGAESLVNTLLQDPALLKALA
SAPKPEAAAAAPDAAASAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0297 NP_454879.1 conserved hypothetical protein Not tested SPI-6 Protein 4e-60 81

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_0179 YP_004226704.1 type VI secretion protein VFG2069 Protein 9e-54 77