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Name : Acav_4447 (Acav_4447) Accession : YP_004236897.1 Strain : Acidovorax avenae ATCC 19860 Genome accession: NC_015138 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 5088439 - 5092563 bp Length : 4125 bp Strand : - Note : KEGG: ajs:Ajs_3897 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA poly DNA sequence : ATGGCCCCAACATCCACGTACAGCTATACCGAACGCAAGCGCATCCGCAAGAGTTTCGGTAGCCGCGACAGCGTGCTCAA AGTGCCGTACCTGCTGCAGATGCAGAAGGACGCGTACACCGCTTTCCTCCAAGCGGACATGGCACCGCAGAAACGCACCA ACGAAGGCCTGCAGGCCGCATTCAACGCAGCGTTCCCGATCGTCTCGCACAACGGCTTCGTCGAGATGAAGTTCGTGGAG TACAACCTGGCCAAGCCGGCGTTCGACGTGCGCGAGTGCCAGACCCGCGGCCTGACGTTCGCCTCGGCCGTGCGTGCCAA GGTGCAGCTCATCATCTATGACCGCGAGTCCTCGACGTCGCAGTCCAAGGTGGTGAAGGAAGTGAAGGAGCAGGAGGTCT ACATGGGCGAGGTGCCCCTGATGACCGACAAGGGCTCGTTCATCATCAACGGCACCGAGCGCGTGATCGTGTCGCAGCTG CACCGTTCGCCCGGCGTGTTCTTCGAGCACGACAAGGGCAAGACGCACAGCTCCGGCAAGCTGCTTTTCTCCGCACGCAT CATTCCCTACCGCGGCTCCTGGCTGGACTTCGAGTTCGACCCGAAGGACATCCTGTATTTCCGCGTGGACCGTCGCCGCA AGATGCCGGTCACGATCCTGCTGAAGGCCATCGGCCTGAACCCGGAATCGATCCTGGCGAACTTCTTCGTCAACGACAAC TTCCGCCTGATGGACAGTGGCGCCCAGATGGAGTTCGTGGCCGACCGCCTGAAGGGCGAAGTGGCGCGCTTCGACATCAC CGACAAGTCCGGCAAGGTCGTCGTGGCCAAGGACAAGCGGATCACCGCCCGCCACACCCGTGAACTGGAGCAGTCCGGCA CGACGCACATCAGCGTGCCGGAAGACTTCCTGATCGGCCGCGTGGTCGCGCGCAACATCGTGGACGGCGATACCGGCGAG ATCGTGGCCAAGGCCAACGAGGAACTCACGGAAGCGCTGCTGAAGAAGCTGCGTTCGGCCGGCGTGCAGGACCTGCAGGT CATCTACACGAACGAACTGGACCAGGGCGCGTACATCTCGCAGACGCTGCGCATCGACGAGACGGTGGACGAGTTCGCCG CCCGCGTGGCCATCTACCGCATGATGCGCCCCGGCGAACCGCCGACGGAAGACGCCGTGCAGGCCCTGTTCCAGCGCCTC TTCTACAACCCGGACACGTACGACCTGTCGCGCGTGGGCCGCATGAAGTTCAACGCCAAGATCGGCCGCGACGAATCCAC CGGCCCGATGGTGCTGTCCAACGACGACATCCTGGCCGTGGTGAAGATCCTGGTGGACCTGCGCAACGGCAAGGGCGAAG TCGATGACATCGACCACCTGGGCAACCGCCGCGTGCGTTGCGTGGGCGAACTGGCCGAGAACCAGTACCGCACGGGCCTG GCGCGTATCGAGAAGGCCGTGAAGGAGCGTCTGGGCCAGGCCGAGCAAGAGCCGCTGATGCCGCACGACCTGATCAACAG CAAGCCGATCTCGGCCGCCCTGAAGGAGTTTTTCGGTGCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGG CGGAAATCACGCACAAGCGCCGCGTCTCGGCCCTGGGCCCGGGCGGCCTGACCCGCGAGCGTGCCGGCTTCGAAGTACGC GACGTGCACGTCACGCACTATGGCCGCGTCTGCCCTATCGAAACGCCTGAAGGCCCGAACATCGGCCTGATCAACTCGCT GGCCCTGTACGCCCGCCTGAACGAGTACGGCTTCATCGAGACGCCGTATCGCCGCGTGGTGGACGGCAAGGTGACCGACC AGATCGACTACCTGTCGGCCATCGAGGAAGGCAAGTACGTCATCGCCCAGGCCAATGCGACGCTGGATGCCGAAGGCCGC CTGACCGGCGACCTGGTGTCGGCCCGCGAGAAGGGTGAATCCACGCTGCTGTCCGCCGAGCGCGTGCAGTACATGGACGT GTCGCCCGCGCAGATCGTGTCGGTGGCCGCATCGCTGGTGCCCTTCCTGGAGCACGATGACGCGAACCGCGCACTGATGG GCGCCAACATGTCGCGCCAGGCCGTGCCCGTGCTGCGTCCGGAAAAGCCCATGGTGGGCACGGGCATCGAGCGCGTGGCG GCCGTGGACTCCGGCACCGTGGTGACCGCCAACCGCGGCGGCATCGTGGACTACGTGGACGCCACCCGCATCGTGGTGCG TGTGAACGACGCCGAAGCCGTGGCCGGCGAAGTGGGCGTGGACATCTACAACCTCATCAAGTACCAGCGTTCCAACCAGA ACACGAACATCCACCAGCGCCCGATCGTGAAGAAGGGCGACGTGCTGGCCAAGGGTGACGTGATCGCCGACGGTGCCTCG ACCGACCTGGGCGAGATCGCCATCGGCCAGAACATGCTGATCGCGTTCATGCCCTGGAACGGCTACAACTTCGAGGATTC GATCCTGATCTCCGAACGCGTGGTGGCCGAAGACCGCTATACCTCGATCCACATCGAGGAACTGGTGGTGATGGCGCGCG ACACGAAGCTGGGCGCCGAGGAAATCACGCGCGACATCCCGAACCTGTCGGAACAGCAGCTGAACCGCCTGGACGAGTCC GGCATCATCTACGTGGGCGCGGAAGTGCAGCCCGGCGACACGCTGGTGGGCAAGGTCACGCCGAAGGGCGAGACCACGCT GACGCCGGAAGAGAAGCTGCTGCGCGCCATCTTCGGCGAGAAGGCTTCCGACGTGAAGGACACCTCGCTGCGCGTGGACC AGGGCTCCTCGGGCACCGTGATCGACGTGCAGGTGTTCACGCGCGAAGGCATCCAGCGCGACAAGCGCGCCCAGCAGATC ATCGACGATGAACTCAAGCGCTTCCGCCTGGACCTGAACGACCAGCTGCGCATCGTGGAGGCCGACGCGTTCGACCGTAT CGAGAAGCTGCTGAACGGCCGCGTGGCCAACGGCGGCCCGCAGAAGCTGGCCAAGGGTACGAAGATCGACAAGGCCTACC TGGCTTCCGTCGAGAAGTTCCACTGGTTCGACATCCGCCCGGCGGAAGACGAAGTGGCGACGCAGCTCGAGTCGATCAAG AACGCCCTGGAGCAGACGCGCCACAGCTTCGACCTGGCTTTCGAAGAGAAGCGCAAGAAGCTCACGCAAGGCGACGAACT GCCGGCTGGCGTGCTGAAGATGGTGAAGGTGTACCTGGCCGTCAAGCGCCGCCTGCAGCCTGGCGACAAGATGGCCGGCC GCCACGGCAACAAGGGCGTGGTGTCCAAGATCGTTCCGGTCGAGGACATGCCCTACATGGCCGACGGCACGCCTGCCGAC ATCGTGCTGAACCCGCTGGGCGTGCCTTCGCGGATGAACATCGGGCAGGTGCTGGAAGTCCACCTGGGCTGGGCCGGCAA GGGCATCGGCCAGCGCATCGGCGACATGCTGCGCGACCAGGCCAAGGCAGCCGAGATGCGCAAGTTCCTCGAAGAGGTCT ACAACTCGCGCGGCCGCAAGGAAGACCTGTCGATGCTGAGCGACGACGAGGTGATGGCCATGGCCGGCAACCTGACCAAC GGTGTTCCGTATGCGACGCCGGTGTTCGACGGTGCGTCGGAAGCCGAGATCAAGGACATGCTGAAGCTGGCCTATCCGGA CGACATCAAGGAGCGCAAGGGCCTGACCGACAGCCGCACGCAGGCCTACCTGTACGACGGCCGCACGGGCGAGCAGTTCG AGCGTCCCACGACGATCGGCTACATGCACTACCTGAAGCTGCACCACTTGGTGGACGACAAGATGCACGCCCGTTCCACC GGTCCGTACTCGCTCGTGACGCAGCAGCCGCTGGGCGGCAAGGCCCAGTTCGGCGGCCAGCGTTTCGGGGAAATGGAAGT GTGGGCGCTGGAAGCGTACGGCGCCTCGTACGTGCTGCAGGAAATGCTCACCGTGAAGTCCGACGACGTGCAGGGCCGTA CCAAGGTGTACGAGTCCATCGTCAAGGGCGAACATGCGATCGAGGCAGGCATGCCCGAGTCGTTCAATGTGCTGGTCAAG GAAATCCGTTCCCTGGGCCTGGACATCGAACTGGAACGTTCTTAA Protein sequence : MAPTSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQKDAYTAFLQADMAPQKRTNEGLQAAFNAAFPIVSHNGFVEMKFVE YNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQL HRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN FRLMDSGAQMEFVADRLKGEVARFDITDKSGKVVVAKDKRITARHTRELEQSGTTHISVPEDFLIGRVVARNIVDGDTGE IVAKANEELTEALLKKLRSAGVQDLQVIYTNELDQGAYISQTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRL FYNPDTYDLSRVGRMKFNAKIGRDESTGPMVLSNDDILAVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRTGL ARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSALGPGGLTRERAGFEVR DVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRVVDGKVTDQIDYLSAIEEGKYVIAQANATLDAEGR LTGDLVSAREKGESTLLSAERVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVA AVDSGTVVTANRGGIVDYVDATRIVVRVNDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKKGDVLAKGDVIADGAS TDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDES GIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQI IDDELKRFRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKLAKGTKIDKAYLASVEKFHWFDIRPAEDEVATQLESIK NALEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPAD IVLNPLGVPSRMNIGQVLEVHLGWAGKGIGQRIGDMLRDQAKAAEMRKFLEEVYNSRGRKEDLSMLSDDEVMAMAGNLTN GVPYATPVFDGASEAEIKDMLKLAYPDDIKERKGLTDSRTQAYLYDGRTGEQFERPTTIGYMHYLKLHHLVDDKMHARST GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVQGRTKVYESIVKGEHAIEAGMPESFNVLVK EIRSLGLDIELERS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 63 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 77 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 73 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 71 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 66 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 64 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 64 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 64 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 64 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 63 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 63 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 63 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 63 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 63 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 63 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 63 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 63 |
| Acav_4447 | YP_004236897.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 45 |
