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Name : Acav_4576 (Acav_4576) Accession : YP_004237025.1 Strain : Acidovorax avenae ATCC 19860 Genome accession: NC_015138 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 5229603 - 5231501 bp Length : 1899 bp Strand : - Note : KEGG: dia:Dtpsy_3355 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-termina DNA sequence : ATGAATCGTTATCCGGTCTGGAAGTACGCGATCCTCGTGGTCGTGCTGCTCGTGGGGATCCTGTACTCCCTGCCCAATGT GTTCGGCGAGGCGCCCGCGGTGCAGGTGTCCTCGGCCAAGGCCTCGGTCAAGGTCGATGCCTCGCTGCAGCGGCGTGTCG AAGAGGCGCTGCAAGGCGCCGGCATCACGCCCGACGCGGTGAGCCTCGACGGCAACTCGGTGCGCGCGCGCTTCGACACG CCCGACACCCAGCTCAAGGCCAAGGACGTCATCCAGAAGGCCCTGGTGCCCGACGCGGCAGATCCGCAGTACATCGTCGC GCTGAACCTCGTCTCCCGTTCGCCCGCATGGCTCACGGCGCTGCATGCGCAGCCCGTCTATCTGGGCCTGGACCTGCGCG GCGGCGTGCACTTCATGCTGCAGGTGGACATGCAGGCGGCGCTCACCAAGAAGGCCGAGTCCTTCGCGGGCGACCTGCGC ACCTTCATGCGCGACCGCAACATCCGCCACGGCGGCATCAGCCGCGACGGCCAGACCATCGAGGTGCGCCTGCGCGACGA GGCCGCGGCCACGGCCACGCGCAACCTGATCTCCGACCAGTTCCCCGACCTCGTGGCCACCTCCAGCCCGGACGGGCAGG GCGTGATCGTGCGCGCGACCATCAAGCCCGAGGCCCTGCGCAAGGTGCAGGACCAGGCGCTCAAGCAGAACATGACCACG CTGCACAACCGGATCAACGAACTCGGCGTGGCCGAGCCGGTGATCCAGCAGCAGGGCACGGACCGCATCGTCGTGCAGCT GCCCGGCGTGCAGGACACCGCCAAGGCCAAGGACATCCTGGGCCGCACCGCTACGCTCGAGGTGCGGATGGTGGACGAGA GCACCGAGGCGCGCGGCGCCGAGCGCGGCTCCGGCCCGGTGCCGTTCGGCAGCGAGCGCTACCCCGACCGCAACGGCCAG TTCGTCATCGTCAAGAAGCAGGTCATCCTGACGGGTGAGAACCTGACCGACGCGCAACCCGGCTTCGACGGCCAGACCCA GGAGCCGACCGTCAACCTGACGCTCGACGCCAAGGGCGCGCGCATCTTCAAGGACATCACGCGCGAGAACATCGGCAAGC GCATGGCCATCGTGCTCTTCGAGAAGGGCAAGGGCGAGGTCGTGACGGCCCCGGTGATCCGCTCCGAGATCGGCGGCGGC CGCGTGCAGATCTCCGGCCGCATGACCACGGCCGAGGCCAACGACACCTCGCTGCTGCTGCGCGCCGGCTCGCTGGCCGC GCCGATGGAGATCATCGAGGAATTCACCATCGGCCCCAGCCTGGGTGCCGACAACATCAGCCGCGGCATCCACAGCGTGG TCTGGGGCATGGTGGCCATCGCCGTGTTCATGTGCGTTTACTACGCGCTGTTCGGCGTGTTCTCCACCATCGCGCTGTCG GTGAACGTGCTCATGCTGATCGCCGTGCTGTCCATGCTGCAGGCCACCCTCACGCTGCCCGGCATTGCCGCCATGGCGCT CGCGCTGGGCGTCGCCATCGACTCGAACGTGCTGATCAACGAGCGCATCCGCGAGGAACTGCGCGCGGGCGTCGCGCCGC AGGCGGCCATCCATGCGGGCTACGAGCGCGCCTGGGCGACCATCCTCGACTCCAACGTGACCACGCTCATCGCCGGCCTC GCGCTGCTGGCCTTCGGCTCGGGCCCGGTGCGGGGCTTCGCCGTGGTGCACTGCCTGGGCATCCTGACCAGCATGTTCTC GGCCGTGTTCTTCTCGCGCGGCCTGGTGAACCTCTGGTACGGCCGCAAGAAGAAGCTCAAGAGCGTGTCCATCGGCCAGG TGTGGAAGCCCGGTCCCGACACCCCGGCGGTACCCTCCGCGCCGGCCAAGACGAACTGA Protein sequence : MNRYPVWKYAILVVVLLVGILYSLPNVFGEAPAVQVSSAKASVKVDASLQRRVEEALQGAGITPDAVSLDGNSVRARFDT PDTQLKAKDVIQKALVPDAADPQYIVALNLVSRSPAWLTALHAQPVYLGLDLRGGVHFMLQVDMQAALTKKAESFAGDLR TFMRDRNIRHGGISRDGQTIEVRLRDEAAATATRNLISDQFPDLVATSSPDGQGVIVRATIKPEALRKVQDQALKQNMTT LHNRINELGVAEPVIQQQGTDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDESTEARGAERGSGPVPFGSERYPDRNGQ FVIVKKQVILTGENLTDAQPGFDGQTQEPTVNLTLDAKGARIFKDITRENIGKRMAIVLFEKGKGEVVTAPVIRSEIGGG RVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHSVVWGMVAIAVFMCVYYALFGVFSTIALS VNVLMLIAVLSMLQATLTLPGIAAMALALGVAIDSNVLINERIREELRAGVAPQAAIHAGYERAWATILDSNVTTLIAGL ALLAFGSGPVRGFAVVHCLGILTSMFSAVFFSRGLVNLWYGRKKKLKSVSIGQVWKPGPDTPAVPSAPAKTN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-101 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-101 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-101 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-101 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-101 | 41 |
