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Name : Plabr_2006 (Plabr_2006) Accession : YP_004269632.1 Strain : Planctomyces brasiliensis DSM 5305 Genome accession: NC_015174 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2372845 - 2376561 bp Length : 3717 bp Strand : - Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta, bacterial-type; InterPro IPR010243: IPR007644: IPR007642: IPR007645: IPR 019462: IPR007120: IPR007641; KEGG: plm:Plim_0443 DNA-directed DNA sequence : ATGCCTGTGCCTGTGCAGCGGGTGTTAAACGTTCAGGAAACTCGAAATACCGGCGTCCTGCAGACCGATTTCGAGATGTC GGGACTGACACGGATTCAAACCGATTCTTATGCCCGTTTTCTGCAAGCCGATGTGGACACCTCTCGTCGCAAACCGGTTG GGCTGGAAGAACTGCTTCGGGAAATCTTCCCTGTCGAGAGCTTCGACGGGCAGTACAAGCTTGAATACATCAAATACGAT CTGGGTAAACCGCGATATTCCCCCATGGAATGTCGTCAGCTGCGGTTGACCTACGGTCGTCCTCTGCGTTTGTGGCTGCG TCTGAATAAAGAACAGCCTATCGAAGAGGAAGTCTACCTCGGCGACTTGCCGATCATGCTCGGTGGTGGTGAATTCATCA TCAACGGTTCCGAGCGTGTTCTGGTTAGCCAGCTGCACCGTTCTCCCGGTGTCGACTTCGTCATCAATGTCGAGCCCGGC GAGCGCAAAACGCATTCCTGCCGTATCATTCCAGAACGTGGTAGCTGGATTGAGCTGCTCATCAGCAAGAAAGAAACGCT CGGGGTCCGTATCGACCAGAGCGGTAAATTCTCTGCGATGACGTTGCTGCGTGCGATGGACAAATCGCACTCAACCGATT CCGAGCTGGTCAAGATGTTCTATCCGACCGAATCGCTCGAAATCACGCGCAACTCCAAAGCCGAAGATTTGACCGGCAAA GTGGTCGCCGACGACATCATCTACCCGGCTGGTCACGAAAAATGCGGCGAGATCATCGTCGAATGTGCCCACCAGATTGT CGAAACGCAGGCCATCGAGCTGCTCGAATCCGGCATCAAGACCGTCGAAGTCGTCACTCAGGTGTCCGACCCGCTGATCA TCAACAGCATCCTGGAAGATTCGACCACCAGCCACGAAGAGGCGCTGCTGCGGATCTATCAGCGTCTGCGTCCGGGTAAC CCGCCGCAGCTCGACAAAGCGATTGACCTGTTCAACGAAAAATTCTTCGATCTGAACCGCTATCGTCTGGGTCGCGTTGG CCGTTTCCGTATCAACCGGAAATTCAAGCAGGACGTTTCGGATGACGAAATGACGCTGCGTCCGATCGACTTCTCAAACT CGATCCATTACCTGCTGCGTCTGCGGTCCGGTGACGATTCTGCCCATATCGACGACATCGATAACCTGGGTAACCGTCGT CTGCGTACCATCGACGAGCTGGCCAGCGACGAAATCCGCAAAGGCTTCCTGAAACTGCGTCGTACGGTGCAGGAACGAAT GAGCCTGAAAGACGTCGACACGATGACGCCGCGGACGCTGATCAACCCGAAAAGCATCTCCGCAGCAATCGACTTCTTCT TCGGTCGTAGCGAACTGTCCCAGGTGGTTGACCAGACCAACCCGCTGTCGATGCTGACACACGAACGCCGTTTGTCTGCG TTGGGACCGGGCGGTTTGAACCGTAAGCGTGCCGGCTTCGAAGTCCGCGACGTTCACATTTCCCACTACGGCCGTATCTG CCCGATTGAAACGCCTGAGGGTACAAACATCGGTTTGATCTCCAGCCTGAGCGTCTACTCCAAAGTGGACGACTACGGGT TCCTGATCACGCCGTATAAGAAAATCGTCGACGGTAAAGTGACCGACGAAATCGAATGGCTGCGTGCTGACGAAGAAGCC AAAGTTTACGTCGCACCTGCCGATACCCCGACCGAAGATGGCAAAGTGGCTGGCACCCGTGTGCTGGCTCGTCACCATCA CGAATTTGTCTGGACCACCCCGGAAACGATCGAGTACTTCGATATTTCTCCATGCCAGATGGTCGGTGTTTCCGCCGGTT TGATTCCGTTCCTGGAACACGACGACGCCAACCGTGCTTTGATGGGTTCGAACATGCAACGGCAGGCCGTGCCGCTGCTG ATCACCGAACAGCCAATCGTCGGCACGGGGATGGAAAAAGTGGTCGCTGAAAACAGCGGCATGGGCGTATTCGCGGAGAA AGCCGGTACGGTCACGTTTGTGGACGCCACTGTCATCGAAATCGATGGCAAGTCGTATCCGCTGCGGAAATACATGGGCT TGAACGAGCGAACCTGCCTGAACCAAAAACCACTGGTTCGCGTCGGCGAGAAAGTCAAGAAGGGTCAACTGCTGTGTGAC ACCGCCGCAACCCGCGACGGCGAACTGGCTCTGGGCCGTAACGTGCTCGTGGCATTCATGTCATGGGAAGGTTACAACTT CGAAGACGCCATTATTCTTTCCGAGCGTCTGGCCAAGGAAGACGTCTACACGTCAATTCACATCGACGAGTTCGATGTCG AAATTCGTGAGACCAAACTGGGTCGCGAAGAGTTCACCCGCGACATTCCGAACGTGAGCGAAAAAGCTCTGCGTCACCTG GACAACAACGGGATTGTGCAGATCGGAACGCGAGTCAGCCCGGGTGACATTCTGGTTGGTAAAGTCACTCCGAAAGCGAA GTCGGAACTGACTCCGGAAGAAAAACTGCTGCACGCCATTTTCGGTCGTGCTGGCGAAGACGTGAAAAACGAATCTCTCG AGGTCCCCAGTGGCGTCGAAGGGATTGTCATTCACACCGAGAAATTCTCTCGCCGGATGAGCCTGACCGAATCTGAGAAG AAGTCTTACGAGTCCGGCCTGAAAGAAGCCGAAACCGAAGGCAACGAAGCAATTGCTGTTGCCTTCAAAGACTTCCTGAA AACCTTCGAAGCCGAGCTTGGCAAACACCTGAGCGATGAAGATGGCATCGAATGGCGTTCGGTCGAAGATCCGAAAATGC TGGCTCAGTATGCAGAAAACTTCCTGCAGAAATTTGAACAGCTCGACATTCGCAGCCCGCAGAAAATTGCGGACTGCAAG AAGATCATCAGCGAGCACTGGTCGATTGTGGAAGACGCCATCGACGCTCGTGACTCCAAGCTGAACACGCTGAAACGTGG CGATGAACTGCCAAGCGGCGTGCTGCAGATGGTGAAGGTCTATGTCGCGTCGAAACGACAGATTTCTGTCGGGGACAAAA TGGCCGGTCGCCACGGTAACAAGGGTGTGATTTCTAAAATCCTGCCCGTGGAAGACATGCCGTTCCTGTCGGACGGAACT CCTGTGGACATCATTTTGAACCCGCTGGGCGTTCCAAGCCGTATGAACGTGGGACAGATTCTCGAAACCCAGCTCGGCTG GGCCGCTGAGAAACTCGGTTTCCGCGCTCTGTGTCCGGTGTTCGACAGTATCGACGAACAGGGCATTTTCGACCTGATGG GCGAAGCGGGACTGCCAACCGATGGTAAATCTCAGCTGTTTGATGGCCGAACCGGTGAAGCGTTCGAACAGAAAACAACC GTCGGTCAAATCTACATGCTGAAACTGCACCACCTGGTGGATGACAAGGTTCACGCCCGTGCCACCGGTCCTTACTCTCT GATTACGCAGCAGCCGTTGGGGGGTAAAGCCCGCTTCGGTGGTCAGCGATTCGGGGAGATGGAAGTGTGGGCACTCGAAG CGTATGGAGCCGCCTACATCCTGCAGGAACTGCTCACCGTGAAAAGTGATGACGTCGAAGGCCGGACCAAGATTTACGAA TCGATGGTCAAAGGCGAAAACACCCTGGAAGCAGGGACGCCAGCCAGTTTCGACGTGTTGAACAACGAGATTCGCGGGTT GTGCCTGAACATGCAGCTCGAAAAAACGACGGGTTAA Protein sequence : MPVPVQRVLNVQETRNTGVLQTDFEMSGLTRIQTDSYARFLQADVDTSRRKPVGLEELLREIFPVESFDGQYKLEYIKYD LGKPRYSPMECRQLRLTYGRPLRLWLRLNKEQPIEEEVYLGDLPIMLGGGEFIINGSERVLVSQLHRSPGVDFVINVEPG ERKTHSCRIIPERGSWIELLISKKETLGVRIDQSGKFSAMTLLRAMDKSHSTDSELVKMFYPTESLEITRNSKAEDLTGK VVADDIIYPAGHEKCGEIIVECAHQIVETQAIELLESGIKTVEVVTQVSDPLIINSILEDSTTSHEEALLRIYQRLRPGN PPQLDKAIDLFNEKFFDLNRYRLGRVGRFRINRKFKQDVSDDEMTLRPIDFSNSIHYLLRLRSGDDSAHIDDIDNLGNRR LRTIDELASDEIRKGFLKLRRTVQERMSLKDVDTMTPRTLINPKSISAAIDFFFGRSELSQVVDQTNPLSMLTHERRLSA LGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSVYSKVDDYGFLITPYKKIVDGKVTDEIEWLRADEEA KVYVAPADTPTEDGKVAGTRVLARHHHEFVWTTPETIEYFDISPCQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLL ITEQPIVGTGMEKVVAENSGMGVFAEKAGTVTFVDATVIEIDGKSYPLRKYMGLNERTCLNQKPLVRVGEKVKKGQLLCD TAATRDGELALGRNVLVAFMSWEGYNFEDAIILSERLAKEDVYTSIHIDEFDVEIRETKLGREEFTRDIPNVSEKALRHL DNNGIVQIGTRVSPGDILVGKVTPKAKSELTPEEKLLHAIFGRAGEDVKNESLEVPSGVEGIVIHTEKFSRRMSLTESEK KSYESGLKEAETEGNEAIAVAFKDFLKTFEAELGKHLSDEDGIEWRSVEDPKMLAQYAENFLQKFEQLDIRSPQKIADCK KIISEHWSIVEDAIDARDSKLNTLKRGDELPSGVLQMVKVYVASKRQISVGDKMAGRHGNKGVISKILPVEDMPFLSDGT PVDIILNPLGVPSRMNVGQILETQLGWAAEKLGFRALCPVFDSIDEQGIFDLMGEAGLPTDGKSQLFDGRTGEAFEQKTT VGQIYMLKLHHLVDDKVHARATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYE SMVKGENTLEAGTPASFDVLNNEIRGLCLNMQLEKTTG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 45 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 44 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 44 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 44 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 44 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 43 |
| Plabr_2006 | YP_004269632.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 42 |
