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Name : Pedsa_1535 (Pedsa_1535) Accession : YP_004273916.1 Strain : Pedobacter saltans DSM 12145 Genome accession: NC_015177 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1809651 - 1811369 bp Length : 1719 bp Strand : + Note : COGs: COG1190 Lysyl-tRNA synthetase (class II); InterPro IPR018149: IPR 002313: IPR 004365: IPR 004364: IPR 006195; KEGG: phe:Phep_1559 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPT DNA sequence : ATGAGTACACTTTCAGAACAGGAGATACAAAGGCGCCAGTCTCTACAAGAATTAAGAAAACTAGGAATTGACCCATATCC TGCAGAAGCGTTCGAAGTAAATGCAAACGCTTTGGATATCACTACGAACTACGAAAGAGATAAAACTTCATATAAGAATA TCAGTTTAGCAGGAAGAATTATGACCCGTAGAATTATGGGGAATGCTTCTTTTGTTGAACTTCAGGATGCTACAGGTCGT ATTCAAGCTTATATCAGAAGAGACGATGTTTGTCCGGGAGAAGATAAGACACTATACAATACCGTATTTAAAAAATTATT AGATATTGGTGATTACATAGGAATTAAAGGTTATGTCTTTACTACACAAACAGGCGAGATTTCTATCCATGTTACTGAAT TTAAGGTATTAAGCAAATCATTAAAACCTCTGCCTATCGTTAAAAGGGATGATGACGGCAATATCTATGATGGTTTTACA GATCCGGAAATGCGTTACAGAATGCGTTATGTGGATTTGACGGTAAACCCGGAATATAAAGAAATTTTCAAAACACGTTC TAAAGTCATCAGCACCATGCGTAGTTATTTTGACGCTAATGGATGGATGGAAGTAGAAACTCCTATATTACAAGCGATAC ATGGTGGTGCCGCTGCAAGACCCTTTAACACATATCACAATACTTTAGATATGCCTTTGTTTTTGCGTATCGCGAATGAG CTTTATCTAAAAAGATTGATTGTTGCAGGTTTCGACGGTGTTTATGAATTTGGTAAGATGTTCCGTAATGAAGGTATGGA TCGTACGCACAATCCAGAGTTCACTTCTATGGAAATCTACGTCGCGTATAAAGATTATATCTGGATGATGGGTATGGTGG AAGAATGTCTGGAAAAAGTTACTATGGCTATCCACGGAAAGACAAAAATCAAGGTTGGTAACGATGAGATTGAATTTGCT GGGCCTTATGAAAAACTTTCTATGTATGATTCCATTAAGAAATATACCGGAATTGACGTTTCTAAAATGGACGAGGGCGA ATTAATAGCTACTTGTAATAATTTAGGTATCGAAGTTGACGCTTCCATGGGTAAAGGCAAATTGGTTGACGCTATCTTTG GAGACAAAGTTGAACACAATCTGATTCAACCCACTTTCATTACAGATTATCCGATAGAAATGACTCCTCTTGCTAAAAAG CACCGTACTGAAGATGGTTTGGTAGAGCGTTTCGAATTATTTGTTCAGGGAAAAGAAATAGCCAACGCTTACTCGGAACT GAATGACGCTATTGATCAAAAAGAAAGATTTGAGGAACAGTTGAAGTTAGCTGCCCGTGGTGATGATGAAGCCATGGTTA TGGATGATGACTTTGTAAGATCATTGGAATATGGTATGCCTCCAACTGCTGGTTTGGGTATTGGTATAGACAGATTAGTG ATGTTGATGACTAACCAATCATCTATTCAGGAAGTATTGTTTTTCCCTCAGATGCGTCCTGAGAAAAAAGCGAAAGTAAC AACTGATGATGATTTTGTAGAACAAGGTATCCCTGCTGAATGGGTACAGGTTATCCGCAAAATGAATATCAATACTATTG ATGAATTAAAAGCTGCCAATCCAAACAAAGTTTTCAATGATTTAGGCGGAATGCGTAAGAAATTGAAGCTGGATTTATCT ATGCCACAAAAAGAAGAAGTAATGAAATGGTTCGAATAG Protein sequence : MSTLSEQEIQRRQSLQELRKLGIDPYPAEAFEVNANALDITTNYERDKTSYKNISLAGRIMTRRIMGNASFVELQDATGR IQAYIRRDDVCPGEDKTLYNTVFKKLLDIGDYIGIKGYVFTTQTGEISIHVTEFKVLSKSLKPLPIVKRDDDGNIYDGFT DPEMRYRMRYVDLTVNPEYKEIFKTRSKVISTMRSYFDANGWMEVETPILQAIHGGAAARPFNTYHNTLDMPLFLRIANE LYLKRLIVAGFDGVYEFGKMFRNEGMDRTHNPEFTSMEIYVAYKDYIWMMGMVEECLEKVTMAIHGKTKIKVGNDEIEFA GPYEKLSMYDSIKKYTGIDVSKMDEGELIATCNNLGIEVDASMGKGKLVDAIFGDKVEHNLIQPTFITDYPIEMTPLAKK HRTEDGLVERFELFVQGKEIANAYSELNDAIDQKERFEEQLKLAARGDDEAMVMDDDFVRSLEYGMPPTAGLGIGIDRLV MLMTNQSSIQEVLFFPQMRPEKKAKVTTDDDFVEQGIPAEWVQVIRKMNINTIDELKAANPNKVFNDLGGMRKKLKLDLS MPQKEEVMKWFE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-103 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pedsa_1535 | YP_004273916.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 8e-104 | 46 |
