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Name : Pedsa_2264 (Pedsa_2264) Accession : YP_004274635.1 Strain : Pedobacter saltans DSM 12145 Genome accession: NC_015177 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2635277 - 2639077 bp Length : 3801 bp Strand : - Note : COGs: COG0085 DNA-directed RNA polymerase subunit beta/140 kD subunit; InterPro IPR000843: IPR 007121: IPR 007644: IPR 007642: IPR 007645: IPR 019462: IPR 007120: IPR 007641: IPR 010243; KEGG: phe:Phep_0849 DNA-directed RNA polymerase, subunit beta; PFAM: DNA sequence : TTGGCAAACAAAAACAATCAAAGGATCAATTTTGCGCAAAGCAAACACGTAATTGATTATCCTGATTTTCTGGATGTGCA AATCCAATCGTTCAAGGAATTCTTTCAGTTAGAAACTACATCAGATAATCGTCACACAGAAGGATTATTTCAAGTATTCG CTGAAAACTTCCCAATCTCAGATTCAAGAAACATTTTCGTTTTAGAATTTTTAGATTATTTTATTGATCCACCTAGATAC GACATTCAAGAATGTATCGAGCGTGGACTAACTTACAGTGTTCCTTTAAAAGCTAAGTTACGTTTATCATGTAACGATGA GGAGCATGAAGATTTCGAGACAATCGTTCAGGATGTTTATTTAGGTACAATTCCTTATATGACTCCTAAAGGAACGTTTG TAATTAATGGAGCTGAGCGTGTTATTGTATCTCAATTACATCGTTCTCCAGGTGTGTTCTTCGGTGTAAGCAGACATACA AACGGAACGAAGCTTTATTCGGCTCGTGTTATTCCTTTCAAGGGATCCTGGATTGAATTTGCTACAGACGTTAATAACGT GATGTATGCATATATCGATCGTAAGAAAAAGTTTCCGGTTACTACGTTACTAAGAGCAATTGGCTATGACGCTGATAAAG ATATCTTAGAAATTTTTGATTTGGCTGATGAAGTTAAAGTTAGCAAGTCGGGTCTTAAAAAATATGTAGGACGTAAGTTA GCTGCCAGGGTTCTTAAAAAATGGGTAGAGGATTTCGTGGATGAGGATACAGGTGAAGTAGTTTCTATTGATAGAAATGA AATTATCCTTGAAAGAGAGACAATCTTAGAAGATGATCATATTGATATGATTGTTGATGCTGGTGTTAAAACTTTGATTT TATCAAAAGAAGATAGCAACAGCGGAGACTATACTATCATTTATAATACTTTGCAGAAAGATACGTCTAACTCTGCAAAA GAAGCGGTTGAGCATATCTACCGTCAATTGCGTAACGCAGAACCACCTGATGAGGAAACAGCGAGAGGTATTATCGATAG ATTATTCTTCTCTGACAAACGTTATGATTTAGGTGATGTTGGTCGTTACAGAATTAATAGGAAATTACAGTTAGATACTC CAGAGGAGACAAAAGTTCTAACTAAAGAGGATATTATTGCGATTGTTAAATATCTGATCAAATTAATCAACTCTAAAGAA GAGGTGGATGATATCGATCACTTATCTAACCGTCGTGTACGTACTGTGGGTGAACAGTTGTATGCTCAATTCGGAGTAGG TCTGTCTCGTATGGCAAGAACTATTCGCGAGCGTATGAACATTCGCGATAACGAAGTATTTACACCTACGGACTTGATTA ACGCCCGTACTTTATCTTCAGTAATCAATTCTTTCTTTGGAACTAATCAGTTATCTCAATTTATGGATCAAACGAATCCA TTAGCGGAGATTACACACAAACGCCGTTTATCTGCGTTAGGTCCTGGTGGTTTATCAAGAGAGAGAGCTGGTTTCGAGGT TCGTGACGTTCACTATACGCACTACGGTCGTTTATGTACCATTGAAACGCCAGAGGGTCCAAACATCGGTTTGATTTCTT CTCTTTGTGTACATGCTAAGATTAATAACTTAGGTTTCATAGAAACTCCGTATCGTAAAGTAGTAGAAGGTAAAGTTTCG GTTAATGAGCCGGTAATTTACTTAAGTGCTGAGGATGAAGATGCGAAAACTATCGCTCAGGCTAATGCTCAGTACGATGA TAAGGGTAACTTCATTGATGAAAAAGTAAAAGCAAGATATGAGGGTGACTTCCCGGTAATCGAACCTGAAAAGTTAGATT ATATGGACGTTTCTCCAAATCAGATTACTTCTATTGCAGCATCGTTGATTCCTTTCCTTGAGCATGATGATGCGAACAGG GCTTTGATGGGATCTAACATGCAGCGTCAGGCTGTTCCTTTATTAAGACCTGAAGCTCCAATTGTAGGTACTGGATTAGA AGGACGTGTTGCCTCTGACTCCCGTACTTTGATTAATGCGGAAGGTAATGGTATAGTAGAGTATGTTGATGCAAATCAAA TCACTATTAAATACGACAGAAACGAAGACGATGAATTGGTTTCTTTTGATGGTGAGTCTAAAACATATAACTTAATTAAG TTTAAGAAAACGAATCAGAGTACCTGTATCAACTTGAAACCTATCGTGAGAAAAGGTGAAAGAGTTGTTAAAGGTCAGGT TCTTTGTGAGGGTTATGCTACAGAAAACGGAGAATTAGCTTTAGGTAGAAACTTAAAAGTTGCTTTCATGCCTTGGCAGG GATACAACTTTGAGGATGCGATCGTAATCTCTGAACGTGTAGTGTCTCAGGATATCTTCACTTCGGTACATATCGAAGAA TTTGAATTGGAAGTACGTGATACCAAACGTGGTGAAGAGGAATTAACACCAGATATTCCTAACGTTTCTGAAGAGGCTAC TAAAGATCTTGATGAGAACGGAATTATCAGAGTTGGTGCAGAGGTTAAAGAAGGTGATATCTTAATAGGTAAAATTACTC CTAAGGGAGAATCAGATCCTTCGCCAGAGGAGAAACTATTAAGAGCAATCTTTGGAGATAAAGCAGGTGACGTAAAAGAC GCTTCTTTAAAAACTCCACCTTCAATTAACGGCGTAGTTATTGACACTAAATTGTTCTCGAGAGCTAAGAAAACTTCTAA AGCAGAGGAAAAATCTCAATTAGACAAGTTAGAAGCAAAACATGAAAAAGCTGTAAGAGAGTTACGCGAGACTTTAGTTG ATAAATTATTCAACATTGTTAATGGAAAAACTTCTCAGGGCGTTTATAATGTGTATAAGGAATTATTAATAGCTAAAGGT GTTAAATTTACTCAAAAGCTATTGATGGAGCTTGATTACAACCACATCAATCCAACCAAATGGACTACTGATGAGGATAA GAACGAGCTGATTAAAGCCTTACTTCATAACTATGGAATCAAGGTTAATGAAGAGCTGGGTGCTTATAGAAGAGATAAGT TTGCTATCAGCGTAGGAGATGAGCTTCCATCAGGTATCGTACAAATGGCTAAAGTTTATGTAGCTAAGAAACGTAAACTA AAAGTTGGGGATAAAATGGCGGGACGTCACGGTAATAAAGGTATCGTAGCGCGTATCGTTCGTGATGAGGACATGCCTTT CTTAGCAGACGGAACACCGGTTGATATCGTATTGAATCCACTAGGGGTACCTTCTCGTATGAACCTTGGACAGATTTACG AAACTATCTTAGGTTGGGCTGGTAAAGAATTAGGATTGAAATTTGCGACTCCAATTTTCGATGGTGCTTCACAAGAAGAG GTAGAAGATTATATCAAGAAAGCAGGTATTCCAGAATCAGGAAGAACATATCTACATGATGGTTTAACCGGAGAGCGTTT TGATCAGCCTACTACTGTTGGTATCATTTACATGTTGAAATTAGGACACATGGTTGATGATAAGATGCATGCTCGTTCTA TCGGTCCTTATTCATTGATTACTCAACAACCTCTTGGTGGTAAAGCACAATTCGGTGGTCAACGTTTTGGTGAGATGGAG GTTTGGGCATTAGAAGCATTCGGTGCTGCTAATATACTTCAGGAAATCTTAACCGTTAAGTCTGATGACGTTGTAGGTAG AGCTAAAACATACGAGGCTATTGTAAAAGGTGAAAACCTTCCAACTCCTGGAGTTCCAGAATCATTCAATGTATTGGTTC ACGAATTGAGAGGATTGGGATTAGATATAACATTAGACTAA Protein sequence : MANKNNQRINFAQSKHVIDYPDFLDVQIQSFKEFFQLETTSDNRHTEGLFQVFAENFPISDSRNIFVLEFLDYFIDPPRY DIQECIERGLTYSVPLKAKLRLSCNDEEHEDFETIVQDVYLGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGVSRHT NGTKLYSARVIPFKGSWIEFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDADKDILEIFDLADEVKVSKSGLKKYVGRKL AARVLKKWVEDFVDEDTGEVVSIDRNEIILERETILEDDHIDMIVDAGVKTLILSKEDSNSGDYTIIYNTLQKDTSNSAK EAVEHIYRQLRNAEPPDEETARGIIDRLFFSDKRYDLGDVGRYRINRKLQLDTPEETKVLTKEDIIAIVKYLIKLINSKE EVDDIDHLSNRRVRTVGEQLYAQFGVGLSRMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTNP LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKINNLGFIETPYRKVVEGKVS VNEPVIYLSAEDEDAKTIAQANAQYDDKGNFIDEKVKARYEGDFPVIEPEKLDYMDVSPNQITSIAASLIPFLEHDDANR ALMGSNMQRQAVPLLRPEAPIVGTGLEGRVASDSRTLINAEGNGIVEYVDANQITIKYDRNEDDELVSFDGESKTYNLIK FKKTNQSTCINLKPIVRKGERVVKGQVLCEGYATENGELALGRNLKVAFMPWQGYNFEDAIVISERVVSQDIFTSVHIEE FELEVRDTKRGEEELTPDIPNVSEEATKDLDENGIIRVGAEVKEGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKD ASLKTPPSINGVVIDTKLFSRAKKTSKAEEKSQLDKLEAKHEKAVRELRETLVDKLFNIVNGKTSQGVYNVYKELLIAKG VKFTQKLLMELDYNHINPTKWTTDEDKNELIKALLHNYGIKVNEELGAYRRDKFAISVGDELPSGIVQMAKVYVAKKRKL KVGDKMAGRHGNKGIVARIVRDEDMPFLADGTPVDIVLNPLGVPSRMNLGQIYETILGWAGKELGLKFATPIFDGASQEE VEDYIKKAGIPESGRTYLHDGLTGERFDQPTTVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEME VWALEAFGAANILQEILTVKSDDVVGRAKTYEAIVKGENLPTPGVPESFNVLVHELRGLGLDITLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 46 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 45 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 44 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 44 |
| Pedsa_2264 | YP_004274635.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 44 |
