Gene Information

Name : Pedsa_0625 (Pedsa_0625)
Accession : YP_004273023.1
Strain : Pedobacter saltans DSM 12145
Genome accession: NC_015177
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 762303 - 762995 bp
Length : 693 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR 017871: IPR 003593; KEGG: phe:Phep_2577 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter; PFAM: ABC tra

DNA sequence : 
ATGGATGAATTAATCAGAATACGGGATATAGGACGAAAGTATGTTATTGGAACAGAAACAATAGAAGCGTTAAAATCTGT
TTCGTTGGATATTCATAAAGGAGAATTTGTAGCGCTAATGGGACCTTCCGGTTCTGGAAAATCTACTTTAATGAATATTC
TTGGCTGTCTTGATACTCCAAGCCATGGAGATTATATCCTCAATGGAATTAATGTAAGCCACATGACGGACAATCAGTTA
GCAACCGTTAGAAATAAAGAGATAGGATTCGTCTTCCAGACTTTTAATTTACTACCTCGTTACACGGCTTTGGAAAATGT
TGCTTTGCCCTTGGTATACGCTGGCGTAAGTAAGAAAGAGAGGGAAGAAAGGGCTCTGGATGCTTTGATAAATGTAGGAC
TGGAAAATAGAGTAGACCATAGGCCTAATGAACTTTCGGGAGGACAGAGGCAAAGAGTTGCTGTAGCAAGAGCTTTGATA
AATAATCCGTCTATTATTTTGGCTGATGAGCCTACCGGGAATTTGGACACCAAAACTTCCGTAGAGATTATGGCTTTAAT
GGAAAATATCCATATAAAAGGAAATACTATTATTTTGGTTACTCATGAAGAGGATATTGCTCGGCATGCACACCGAATTG
TTAGGATGAGAGACGGACTTATAGAAAACGACGATTTAATATCGAAAGTTTAA

Protein sequence : 
MDELIRIRDIGRKYVIGTETIEALKSVSLDIHKGEFVALMGPSGSGKSTLMNILGCLDTPSHGDYILNGINVSHMTDNQL
ATVRNKEIGFVFQTFNLLPRYTALENVALPLVYAGVSKKEREERALDALINVGLENRVDHRPNELSGGQRQRVAVARALI
NNPSIILADEPTGNLDTKTSVEIMALMENIHIKGNTIILVTHEEDIARHAHRIVRMRDGLIENDDLISKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pedsa_0625 YP_004273023.1 ABC transporter NC_012469.1.7686878. Protein 1e-59 56
Pedsa_0625 YP_004273023.1 ABC transporter NC_008702.1.4606598. Protein 1e-49 52
Pedsa_0625 YP_004273023.1 ABC transporter CP001581.1.gene598.p Protein 4e-42 43
Pedsa_0625 YP_004273023.1 ABC transporter CP001581.1.gene798.p Protein 2e-42 43